Rosetta
protocols::electron_density::DockPDBIntoDensityMover Member List

This is the complete list of members for protocols::electron_density::DockPDBIntoDensityMover, including all inherited members.

all_native_com_protocols::electron_density::DockPDBIntoDensityMoverprivate
all_native_mca_protocols::electron_density::DockPDBIntoDensityMoverprivate
all_native_seq_center_protocols::electron_density::DockPDBIntoDensityMoverprivate
all_natives_protocols::electron_density::DockPDBIntoDensityMoverprivate
analyze_RefinementDB(RevRefinementResultDB)protocols::electron_density::DockPDBIntoDensityMover
apply(core::pose::Pose &) overrideprotocols::electron_density::DockPDBIntoDensityMovervirtual
apply_refinement(utility::vector1< std::string > const &, core::pose::PoseOP const, RBfitResultDB &, bool const)protocols::electron_density::DockPDBIntoDensityMover
apply_search(core::pose::Pose &pose, core::Size const result_size)protocols::electron_density::DockPDBIntoDensityMover
B_protocols::electron_density::DockPDBIntoDensityMoverprivate
cart_ref_protocols::electron_density::DockPDBIntoDensityMoverprivate
centroid_silent_out_protocols::electron_density::DockPDBIntoDensityMoverprivate
cheat_native_com_protocols::electron_density::DockPDBIntoDensityMoverprivate
cheat_native_mca_protocols::electron_density::DockPDBIntoDensityMoverprivate
check_for_existing_output_file(std::string const &) constprotocols::electron_density::DockPDBIntoDensityMover
clear_info()protocols::moves::Moverinlinevirtual
clone() constprotocols::moves::Movervirtual
cluster_oversample_protocols::electron_density::DockPDBIntoDensityMoverprivate
cluster_radius_protocols::electron_density::DockPDBIntoDensityMoverprivate
cluster_RevRefinementDB(RevRefinementResultDB &, core::Size)protocols::electron_density::DockPDBIntoDensityMover
cluster_silent(utility::vector1< std::string > const &)protocols::electron_density::DockPDBIntoDensityMover
combine_refinement(utility::vector1< std::string > const &, RevRefinementResultDB &refinement_results)protocols::electron_density::DockPDBIntoDensityMover
combine_search(utility::vector1< std::string > const &, core::pose::Pose const &, RBfitResultDB &)protocols::electron_density::DockPDBIntoDensityMover
combined_search_results_fname_protocols::electron_density::DockPDBIntoDensityMoverprivate
compare_and_align_poses(core::pose::Pose &, core::pose::Pose const &)protocols::electron_density::DockPDBIntoDensityMover
constrain_refinement_protocols::electron_density::DockPDBIntoDensityMoverprivate
convolute_single_residue_protocols::electron_density::DockPDBIntoDensityMoverprivate
core_idx_protocols::electron_density::DockPDBIntoDensityMoverprivate
create()protocols::moves::Movervirtual
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
delR_protocols::electron_density::DockPDBIntoDensityMoverprivate
dens_wt_protocols::electron_density::DockPDBIntoDensityMoverprivate
do_refine_protocols::electron_density::DockPDBIntoDensityMoverprivate
DockPDBIntoDensityMover()protocols::electron_density::DockPDBIntoDensityMoverinline
dump_inter_protocols::electron_density::DockPDBIntoDensityMoverprivate
dump_inter_silent_protocols::electron_density::DockPDBIntoDensityMoverprivate
dump_RBfitDB_to_pdbs(RBfitResultDB &resultDB, core::pose::PoseOP const &) constprotocols::electron_density::DockPDBIntoDensityMover
final_chain_protocols::electron_density::DockPDBIntoDensityMoverprivate
fragDens_protocols::electron_density::DockPDBIntoDensityMoverprivate
fresh_instance() constprotocols::moves::Movervirtual
gaussian_blur_protocols::electron_density::DockPDBIntoDensityMoverprivate
get_additional_output()protocols::moves::Movervirtual
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_name() const overrideprotocols::electron_density::DockPDBIntoDensityMoverinlinevirtual
get_native_pose() constprotocols::moves::Mover
get_points_to_search(core::pose::PoseOP const)protocols::electron_density::DockPDBIntoDensityMover
get_radius(core::pose::Pose const &)protocols::electron_density::DockPDBIntoDensityMover
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_top_N_filter() constprotocols::electron_density::DockPDBIntoDensityMoverinline
get_type() constprotocols::moves::Moverinline
gridStep_protocols::electron_density::DockPDBIntoDensityMoverprivate
import_refinement_silent_files(utility::vector1< std::string > const &, RevRefinementResultDB &)protocols::electron_density::DockPDBIntoDensityMover
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
input_pose_protocols::moves::Moverprivate
laplacian_offset_protocols::electron_density::DockPDBIntoDensityMoverprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
manual_refine_pdb(core::pose::PoseOP const &)protocols::electron_density::DockPDBIntoDensityMover
max_rot_per_trans_protocols::electron_density::DockPDBIntoDensityMoverprivate
min_backbone_protocols::electron_density::DockPDBIntoDensityMoverprivate
minimize_poseOP_into_density(core::pose::PoseOP const, MinimizePoseIntoDensityOptions const &params, utility::vector1< core::Real > &)protocols::electron_density::DockPDBIntoDensityMover
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
native_pose_protocols::moves::Moverprivate
ncyc_protocols::electron_density::DockPDBIntoDensityMoverprivate
nRsteps_protocols::electron_density::DockPDBIntoDensityMoverprivate
overwrite_protocols::electron_density::DockPDBIntoDensityMoverprivate
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)protocols::moves::Movervirtual
passthrough_protocols::electron_density::DockPDBIntoDensityMoverprivate
point_radius_protocols::electron_density::DockPDBIntoDensityMoverprivate
point_search_end_protocols::electron_density::DockPDBIntoDensityMoverprivate
point_search_results_fname_protocols::electron_density::DockPDBIntoDensityMoverprivate
point_search_start_protocols::electron_density::DockPDBIntoDensityMoverprivate
points_defined_protocols::electron_density::DockPDBIntoDensityMoverprivate
points_to_search_protocols::electron_density::DockPDBIntoDensityMoverprivate
points_to_search_fname_protocols::electron_density::DockPDBIntoDensityMoverprivate
points_to_search_pdb_fname_protocols::electron_density::DockPDBIntoDensityMoverprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
predefine_search(utility::vector1< numeric::xyzVector< core::Real > > &pts_in)protocols::electron_density::DockPDBIntoDensityMover
provide_citation_info(basic::citation_manager::CitationCollectionList &) constprotocols::moves::Movervirtual
read_in_partial_search_results(utility::vector1< std::string > const &) constprotocols::electron_density::DockPDBIntoDensityMover
read_in_points_to_search()protocols::electron_density::DockPDBIntoDensityMover
refine_end_protocols::electron_density::DockPDBIntoDensityMoverprivate
refine_partial_RBfitResultDB(utility::vector1< core::pose::PoseOP > const &, RBfitResultDB &, RevRefinementResultDB &)protocols::electron_density::DockPDBIntoDensityMover
refine_RBfitResultDB(core::pose::PoseOP const &, RBfitResultDB &, RevRefinementResultDB &)protocols::electron_density::DockPDBIntoDensityMover
refine_start_protocols::electron_density::DockPDBIntoDensityMoverprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
reset_status()protocols::moves::Mover
rot_middle_ca_protocols::electron_density::DockPDBIntoDensityMoverprivate
rot_seq_center_protocols::electron_density::DockPDBIntoDensityMoverprivate
run_aio(core::pose::PoseOP const)protocols::electron_density::DockPDBIntoDensityMover
score_and_dump_natives()protocols::electron_density::DockPDBIntoDensityMover
score_natives_protocols::electron_density::DockPDBIntoDensityMoverprivate
search_results_to_pdb(utility::vector1< std::string > const &, core::pose::PoseOP const &)protocols::electron_density::DockPDBIntoDensityMover
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_nRsteps_from_pose(core::pose::Pose const &pose)protocols::electron_density::DockPDBIntoDensityMover
set_refinement_responsibilities(RBfitResultDB &)protocols::electron_density::DockPDBIntoDensityMover
set_search_responsibilities()protocols::electron_density::DockPDBIntoDensityMover
set_type(std::string const &setting)protocols::moves::Moverinline
setB(core::Real B)protocols::electron_density::DockPDBIntoDensityMoverinline
setCartRef(core::Real cart_ref)protocols::electron_density::DockPDBIntoDensityMoverinline
setCentroidSilentOut(bool centroid_silent_out)protocols::electron_density::DockPDBIntoDensityMoverinline
setCheatNativeCOM(bool cheat_native_com)protocols::electron_density::DockPDBIntoDensityMoverinline
setCheatNativeMCA(bool cheat_native_mca)protocols::electron_density::DockPDBIntoDensityMoverinline
setClusterOversamp(core::Size cluster_oversample)protocols::electron_density::DockPDBIntoDensityMoverinline
setClusterRadius(core::Real cluster_radius)protocols::electron_density::DockPDBIntoDensityMoverinline
setCombinedSearchResultsFname(std::string const &combined_search_results_fname)protocols::electron_density::DockPDBIntoDensityMoverinline
setConstrainRefinement(core::Real constrain_refinement)protocols::electron_density::DockPDBIntoDensityMoverinline
setConvoluteSingleR(bool convolute_single_residue)protocols::electron_density::DockPDBIntoDensityMoverinline
setCoreIdx(utility::vector1< core::Size > core_idx)protocols::electron_density::DockPDBIntoDensityMoverinline
setDelR(core::Real delR)protocols::electron_density::DockPDBIntoDensityMoverinline
setDoRefine(bool do_refine)protocols::electron_density::DockPDBIntoDensityMoverinline
setDumpInter(bool dump_inter)protocols::electron_density::DockPDBIntoDensityMoverinline
setDumpInterSilent(bool dump_inter_silent)protocols::electron_density::DockPDBIntoDensityMoverinline
setFinalChain(std::string const &final_chain)protocols::electron_density::DockPDBIntoDensityMoverinline
setFragDens(core::Real fragDens)protocols::electron_density::DockPDBIntoDensityMoverinline
setGaussianBlur(bool gaussian_blur)protocols::electron_density::DockPDBIntoDensityMoverinline
setGridStep(core::Size gridStep)protocols::electron_density::DockPDBIntoDensityMoverinline
setLaplacianOffset(core::Real laplacian_offset)protocols::electron_density::DockPDBIntoDensityMoverinline
setMaxRotPerTrans(core::Size max_rot_per_trans)protocols::electron_density::DockPDBIntoDensityMoverinline
setMinBackbone(bool min_backbone)protocols::electron_density::DockPDBIntoDensityMoverinline
setMultiNative(utility::vector1< core::pose::PoseOP > const &)protocols::electron_density::DockPDBIntoDensityMover
setNCyc(core::Size ncyc)protocols::electron_density::DockPDBIntoDensityMoverinline
setNRsteps(core::Real nRsteps)protocols::electron_density::DockPDBIntoDensityMoverinline
setOutputSilent(std::string silent_out)protocols::electron_density::DockPDBIntoDensityMoverinline
setOverwrite(bool overwrite)protocols::electron_density::DockPDBIntoDensityMoverinline
setPassThrough(bool passthrough)protocols::electron_density::DockPDBIntoDensityMoverinline
setPointRadius(core::Real point_radius)protocols::electron_density::DockPDBIntoDensityMoverinline
setPointSearchResultsFname(std::string const &point_search_results_fname)protocols::electron_density::DockPDBIntoDensityMoverinline
setPointsToSearchFname(std::string const &pts_fname)protocols::electron_density::DockPDBIntoDensityMoverinline
setPointsToSearchPDBFname(std::string const &pts_fname)protocols::electron_density::DockPDBIntoDensityMoverinline
setRefineEnd(core::Size refine_end)protocols::electron_density::DockPDBIntoDensityMoverinline
setRefineStart(core::Size refine_start)protocols::electron_density::DockPDBIntoDensityMoverinline
setRotateMiddleCA(bool rot_middle_ca)protocols::electron_density::DockPDBIntoDensityMoverinline
setRotateOnSeqCenter(bool val)protocols::electron_density::DockPDBIntoDensityMoverinline
setRotateSeqCenter(bool rot_seq_center)protocols::electron_density::DockPDBIntoDensityMoverinline
setScoreNatives(bool score_natives)protocols::electron_density::DockPDBIntoDensityMoverinline
setSearchEnd(core::Size point_search_end)protocols::electron_density::DockPDBIntoDensityMoverinline
setSearchStart(core::Size point_search_start)protocols::electron_density::DockPDBIntoDensityMoverinline
setStartModel(std::string const &startmodel)protocols::electron_density::DockPDBIntoDensityMoverinline
setSymminfo(DensitySymmInfo const &symminfo)protocols::electron_density::DockPDBIntoDensityMoverinline
setTag(std::string tag)protocols::electron_density::DockPDBIntoDensityMoverinline
setTopN(core::Size const topNtrans, core::Size const topNfilter, core::Size const topNfinal)protocols::electron_density::DockPDBIntoDensityMoverinline
show(std::ostream &output=std::cout) constprotocols::moves::Movervirtual
silent_protocols::electron_density::DockPDBIntoDensityMoverprivate
start_model_protocols::electron_density::DockPDBIntoDensityMoverprivate
Strings typedefprotocols::moves::Mover
symminfo_protocols::electron_density::DockPDBIntoDensityMoverprivate
tag_protocols::electron_density::DockPDBIntoDensityMoverprivate
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
topNfilter_protocols::electron_density::DockPDBIntoDensityMoverprivate
topNfinal_protocols::electron_density::DockPDBIntoDensityMoverprivate
topNtrans_protocols::electron_density::DockPDBIntoDensityMoverprivate
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
Generated on Thu Sep 11 2025 21:30:56 for Rosetta by doxygen 1.9.1