protocols::stepwise::screener::AnchorSugarScreener Class Reference

#include <AnchorSugarScreener.hh>

Inheritance diagram for protocols::stepwise::screener::AnchorSugarScreener:

Public Member Functions
	AnchorSugarScreener (modeler::rna::sugar::SugarModeling const &anchor_sugar_modeling, modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP chain_closable_geometry_to_anchor_checker, core::pose::Pose &sugar_screening_pose, bool const is_prepend, modeler::rna::checker::RNA_AtrRepCheckerOP atr_rep_checker_with_instantiated_sugar, utility::vector1< modeler::rna::checker::RNA_AtrRepCheckerOP > const &atr_rep_checkers_for_anchor_sugar_models, TagDefinitionOP tag_definition)
	~AnchorSugarScreener () override
bool	check_screen () override
std::string	name () const override
StepWiseScreenerType	type () const override
void	add_mover (moves::CompositionMoverOP update_mover, moves::CompositionMoverOP restore_mover) override
core::Size const &	anchor_sugar_solution_number () const
Public Member Functions inherited from protocols::stepwise::screener::StepWiseScreener
	StepWiseScreener ()
	~StepWiseScreener () override
virtual void	get_update (sampler::StepWiseSamplerOP)
virtual void	apply_mover (moves::CompositionMoverOP, core::Size const, core::Size const)
virtual void	fast_forward (sampler::StepWiseSamplerOP)
core::Size const &	count () const
void	increment_count ()
void	reset ()
void	set_ok_to_increment (bool const setting)

Private Attributes
modeler::rna::sugar::SugarModeling const &	anchor_sugar_modeling_
modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP	chain_closable_geometry_to_anchor_checker_
core::pose::Pose &	sugar_screening_pose_
modeler::rna::checker::RNA_AtrRepCheckerOP	atr_rep_checker_with_instantiated_sugar_
utility::vector1< modeler::rna::checker::RNA_AtrRepCheckerOP >	atr_rep_checkers_for_anchor_sugar_models_
TagDefinitionOP	tag_definition_
bool const	is_prepend_
std::string const	moving_atom_name_
std::string const	reference_atom_name_
core::Size	anchor_sugar_solution_number_

Constructor & Destructor Documentation

AnchorSugarScreener()

protocols::stepwise::screener::AnchorSugarScreener::AnchorSugarScreener	(	modeler::rna::sugar::SugarModeling const &	anchor_sugar_modeling,
		modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP	chain_closable_geometry_to_anchor_checker,
		core::pose::Pose &	sugar_screening_pose,
		bool const	is_prepend,
		modeler::rna::checker::RNA_AtrRepCheckerOP	atr_rep_checker_with_instantiated_sugar,
		utility::vector1< modeler::rna::checker::RNA_AtrRepCheckerOP > const &	atr_rep_checkers_for_anchor_sugar_models,
		TagDefinitionOP	tag_definition
	)

~AnchorSugarScreener()

protocols::stepwise::screener::AnchorSugarScreener::~AnchorSugarScreener ( )

overridedefault

Member Function Documentation

add_mover()

void protocols::stepwise::screener::AnchorSugarScreener::add_mover ( moves::CompositionMoverOP  update_mover, moves::CompositionMoverOP  restore_mover  )

overridevirtual

Reimplemented from protocols::stepwise::screener::StepWiseScreener.

References anchor_sugar_modeling_, anchor_sugar_solution_number_, protocols::stepwise::modeler::rna::sugar::SugarModeling::bulge_res, protocols::stepwise::modeler::rna::sugar::SugarModeling::moving_res, protocols::stepwise::modeler::rna::sugar::SugarModeling::pose_list, protocols::stepwise::modeler::rna::sugar::SugarModeling::reference_res, and protocols::stepwise::modeler::rna::sugar::SugarModeling::sample_sugar.

anchor_sugar_solution_number()

core::Size const& protocols::stepwise::screener::AnchorSugarScreener::anchor_sugar_solution_number ( ) const

inline

References anchor_sugar_solution_number_.

Referenced by protocols::stepwise::StepWiseSampleAndScreen::early_exit_check().

check_screen()

bool protocols::stepwise::screener::AnchorSugarScreener::check_screen ( )

overridevirtual

Reimplemented from protocols::stepwise::screener::StepWiseScreener.

References anchor_sugar_modeling_, anchor_sugar_solution_number_, atr_rep_checker_with_instantiated_sugar_, atr_rep_checkers_for_anchor_sugar_models_, chain_closable_geometry_to_anchor_checker_, protocols::stepwise::modeler::rna::sugar::copy_bulge_res_and_sugar_torsion(), is_prepend_, protocols::stepwise::modeler::rna::sugar::SugarModeling::pose_list, protocols::stepwise::modeler::rna::sugar::SugarModeling::sample_sugar, sugar_screening_pose_, tag_definition_, and core::pose::tag_from_pose().

name()

std::string protocols::stepwise::screener::AnchorSugarScreener::name ( ) const

inlineoverridevirtual

Implements protocols::stepwise::screener::StepWiseScreener.

type()

StepWiseScreenerType protocols::stepwise::screener::AnchorSugarScreener::type ( ) const

inlineoverridevirtual

Implements protocols::stepwise::screener::StepWiseScreener.

References protocols::stepwise::screener::ANCHOR_SUGAR.

Member Data Documentation

anchor_sugar_modeling_

modeler::rna::sugar::SugarModeling const& protocols::stepwise::screener::AnchorSugarScreener::anchor_sugar_modeling_

private

Referenced by add_mover(), and check_screen().

anchor_sugar_solution_number_

core::Size protocols::stepwise::screener::AnchorSugarScreener::anchor_sugar_solution_number_

private

Referenced by add_mover(), anchor_sugar_solution_number(), and check_screen().

atr_rep_checker_with_instantiated_sugar_

modeler::rna::checker::RNA_AtrRepCheckerOP protocols::stepwise::screener::AnchorSugarScreener::atr_rep_checker_with_instantiated_sugar_

private

Referenced by check_screen().

atr_rep_checkers_for_anchor_sugar_models_

utility::vector1< modeler::rna::checker::RNA_AtrRepCheckerOP > protocols::stepwise::screener::AnchorSugarScreener::atr_rep_checkers_for_anchor_sugar_models_

private

Referenced by check_screen().

chain_closable_geometry_to_anchor_checker_

modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP protocols::stepwise::screener::AnchorSugarScreener::chain_closable_geometry_to_anchor_checker_

private

Referenced by check_screen().

is_prepend_

bool const protocols::stepwise::screener::AnchorSugarScreener::is_prepend_

private

Referenced by check_screen().

moving_atom_name_

std::string const protocols::stepwise::screener::AnchorSugarScreener::moving_atom_name_

private

reference_atom_name_

std::string const protocols::stepwise::screener::AnchorSugarScreener::reference_atom_name_

private

sugar_screening_pose_

core::pose::Pose& protocols::stepwise::screener::AnchorSugarScreener::sugar_screening_pose_

private

Referenced by check_screen().

tag_definition_

TagDefinitionOP protocols::stepwise::screener::AnchorSugarScreener::tag_definition_

private

Referenced by check_screen().

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The documentation for this class was generated from the following files:

• src/protocols/stepwise/screener/AnchorSugarScreener.hh
• src/protocols/stepwise/screener/AnchorSugarScreener.cc