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Rosetta
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This is the complete list of members for core::energy_methods::FaMPSolvEnergy, including all inherited members.
| analytic_etable_evaluation_ | core::energy_methods::FaMPSolvEnergy | private |
| atomic_interaction_cutoff() const override | core::energy_methods::FaMPSolvEnergy | virtual |
| atomistic_energy(core::Size atmno, conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) const | core::scoring::methods::EnergyMethod | virtual |
| atomistic_pair_energy(core::Size atmno1, conformation::Residue const &rsd1, core::Size atomno2, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) const | core::scoring::methods::EnergyMethod | virtual |
| atoms_with_dof_derivatives(conformation::Residue const &res, pose::Pose const &p) const | core::scoring::methods::TwoBodyEnergy | virtual |
| backbone_backbone_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::methods::TwoBodyEnergy | virtual |
| backbone_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::methods::TwoBodyEnergy | virtual |
| bump_energy_backbone(conformation::Residue const &, conformation::Residue const &, pose::Pose const &, ScoreFunction const &, EnergyMap &) const | core::scoring::methods::TwoBodyEnergy | virtual |
| bump_energy_full(conformation::Residue const &, conformation::Residue const &, pose::Pose const &, ScoreFunction const &, EnergyMap &) const | core::scoring::methods::TwoBodyEnergy | virtual |
| clone() const override | core::energy_methods::FaMPSolvEnergy | virtual |
| ContextDependentTwoBodyEnergy(EnergyMethodCreatorOP creator) | core::scoring::methods::ContextDependentTwoBodyEnergy | |
| defines_high_order_terms(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| defines_intrares_dof_derivatives(pose::Pose const &p) const | core::scoring::methods::TwoBodyEnergy | virtual |
| defines_intrares_energy(core::scoring::EnergyMap const &) const override | core::energy_methods::FaMPSolvEnergy | inlinevirtual |
| defines_intrares_energy_for_residue(conformation::Residue const &res) const | core::scoring::methods::TwoBodyEnergy | virtual |
| defines_score_for_residue_pair(conformation::Residue const &res1, conformation::Residue const &res2, bool res_moving_wrt_eachother) const | core::scoring::methods::TwoBodyEnergy | virtual |
| divides_backbone_and_sidechain_energetics() const | core::scoring::methods::ShortRangeTwoBodyEnergy | virtual |
| dsolv1_ | core::energy_methods::FaMPSolvEnergy | private |
| dsolv2_ | core::energy_methods::FaMPSolvEnergy | private |
| dsolv_ | core::energy_methods::FaMPSolvEnergy | private |
| dsolvationE(conformation::Atom const &atom1, conformation::Atom const &atom2, Real dis2, Real &dsolvE1, Real &dsolvE2, Real &dmembsolvE1, Real &dmembsolvE2) const | core::energy_methods::FaMPSolvEnergy | private |
| EnergyMethod(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | |
| etable_ | core::energy_methods::FaMPSolvEnergy | private |
| eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, core::scoring::ScoreFunction const &sfxn, core::scoring::EnergyMap const &weights, Vector &F1, Vector &F2) const override | core::energy_methods::FaMPSolvEnergy | virtual |
| eval_dE_dR_over_r(conformation::Atom const &atom1, conformation::Atom const &atom2, core::scoring::EnergyMap const &weights, Vector &F1, Vector &F2, Real const &f1, Real const &f2) const | core::energy_methods::FaMPSolvEnergy | private |
| eval_intrares_derivatives(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &atom_derivs) const | core::scoring::methods::TwoBodyEnergy | virtual |
| eval_intrares_energy(conformation::Residue const &, pose::Pose const &, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &emap) const override | core::energy_methods::FaMPSolvEnergy | virtual |
| eval_intrares_energy_ext(conformation::Residue const &rsd, ResSingleMinimizationData const &data_cache, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::methods::TwoBodyEnergy | virtual |
| eval_intraresidue_dof_derivative(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, id::DOF_ID const &dof_id, id::TorsionID const &torsion_id, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights) const | core::scoring::methods::TwoBodyEnergy | virtual |
| eval_lk(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const &d2, Real const &f1, Real const &f2, bool &debug) const | core::energy_methods::FaMPSolvEnergy | private |
| eval_residue_pair_derivatives(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResSingleMinimizationData const &, ResSingleMinimizationData const &, ResPairMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &r1_atom_derivs, utility::vector1< DerivVectorPair > &r2_atom_derivs) const | core::scoring::methods::TwoBodyEnergy | virtual |
| evaluate_rotamer_background_energies(conformation::RotamerSetBase const &set, conformation::Residue const &residue, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, utility::vector1< core::PackerEnergy > &energy_vector) const override | core::scoring::methods::ShortRangeTwoBodyEnergy | virtual |
| evaluate_rotamer_background_energy_maps(conformation::RotamerSetBase const &set, conformation::Residue const &residue, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, utility::vector1< EnergyMap > &emaps) const override | core::scoring::methods::ShortRangeTwoBodyEnergy | virtual |
| evaluate_rotamer_intrares_energies(conformation::RotamerSetBase const &set, pose::Pose const &pose, ScoreFunction const &sfxn, utility::vector1< core::PackerEnergy > &energies) const | core::scoring::methods::TwoBodyEnergy | virtual |
| evaluate_rotamer_intrares_energy_maps(conformation::RotamerSetBase const &set, pose::Pose const &pose, ScoreFunction const &sfxn, utility::vector1< EnergyMap > &emaps) const | core::scoring::methods::TwoBodyEnergy | virtual |
| evaluate_rotamer_pair_energies(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, ObjexxFCL::FArray2D< core::PackerEnergy > &energy_table) const override | core::scoring::methods::ShortRangeTwoBodyEnergy | virtual |
| fa_f1_ | core::energy_methods::FaMPSolvEnergy | mutableprivate |
| fa_f2_ | core::energy_methods::FaMPSolvEnergy | mutableprivate |
| fa_proj_ | core::energy_methods::FaMPSolvEnergy | mutableprivate |
| fa_weight_ | core::energy_methods::FaMPSolvEnergy | mutableprivate |
| FaMPSolvEnergy(core::scoring::etable::EtableCAP etable_in, core::scoring::etable::MembEtableCAP memb_etable_in, bool const analytic_membetable_evaluation) | core::energy_methods::FaMPSolvEnergy | |
| finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | virtual |
| finalize_after_minimizing(pose::Pose &pose) const | core::scoring::methods::EnergyMethod | virtual |
| finalize_total_energy(pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &emap) const override | core::energy_methods::FaMPSolvEnergy | virtual |
| get_bins_per_A2_ | core::energy_methods::FaMPSolvEnergy | private |
| get_residue_pair_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, Real &fa_mbsolv_score) const | core::energy_methods::FaMPSolvEnergy | private |
| has_atomistic_energies() const | core::scoring::methods::EnergyMethod | virtual |
| has_atomistic_pairwise_energies() const | core::scoring::methods::EnergyMethod | virtual |
| indicate_required_context_graphs(utility::vector1< bool > &context_graphs_required) const override | core::energy_methods::FaMPSolvEnergy | virtual |
| init(pose::Pose &pose) const | core::energy_methods::FaMPSolvEnergy | private |
| lj_radius_ | core::energy_methods::FaMPSolvEnergy | private |
| lk_dgfree_ | core::energy_methods::FaMPSolvEnergy | private |
| lk_lambda_ | core::energy_methods::FaMPSolvEnergy | private |
| lk_volume_ | core::energy_methods::FaMPSolvEnergy | private |
| max_dis_ | core::energy_methods::FaMPSolvEnergy | private |
| max_normal_dis_ | core::energy_methods::FaMPSolvEnergy | private |
| memb_dsolv1_ | core::energy_methods::FaMPSolvEnergy | private |
| memb_dsolv2_ | core::energy_methods::FaMPSolvEnergy | private |
| memb_etable_ | core::energy_methods::FaMPSolvEnergy | private |
| memb_lk_dgfree_ | core::energy_methods::FaMPSolvEnergy | private |
| memb_solv1_ | core::energy_methods::FaMPSolvEnergy | private |
| memb_solv2_ | core::energy_methods::FaMPSolvEnergy | private |
| method_type() const override | core::scoring::methods::ContextDependentTwoBodyEnergy | virtual |
| minimize_in_whole_structure_context(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| parent typedef | core::energy_methods::FaMPSolvEnergy | |
| prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const | core::scoring::methods::EnergyMethod | virtual |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | core::scoring::methods::EnergyMethod | virtual |
| requires_a_setup_for_derivatives_for_residue_opportunity(pose::Pose const &pose) const | core::scoring::methods::TwoBodyEnergy | virtual |
| requires_a_setup_for_derivatives_for_residue_pair_opportunity(pose::Pose const &pose) const | core::scoring::methods::TwoBodyEnergy | virtual |
| requires_a_setup_for_scoring_for_residue_opportunity_during_minimization(pose::Pose const &pose) const | core::scoring::methods::TwoBodyEnergy | virtual |
| requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) const | core::scoring::methods::EnergyMethod | virtual |
| requires_a_setup_for_scoring_for_residue_pair_opportunity(pose::Pose const &pose) const | core::scoring::methods::TwoBodyEnergy | virtual |
| residue_pair_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &emap) const override | core::energy_methods::FaMPSolvEnergy | virtual |
| residue_pair_energy_ext(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResPairMinimizationData const &min_data, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::methods::TwoBodyEnergy | virtual |
| safe_max_dis2_ | core::energy_methods::FaMPSolvEnergy | private |
| score_types() const | core::scoring::methods::EnergyMethod | inline |
| score_types_ | core::scoring::methods::EnergyMethod | private |
| set_score_types(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | protected |
| setup_for_derivatives(pose::Pose &pose, core::scoring::ScoreFunction const &scfxn) const override | core::energy_methods::FaMPSolvEnergy | virtual |
| setup_for_derivatives_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data, basic::datacache::BasicDataCache &res_data_cache) const | core::scoring::methods::TwoBodyEnergy | virtual |
| setup_for_derivatives_for_residue_pair(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResSingleMinimizationData const &minsingle_data1, ResSingleMinimizationData const &minsingle_data2, pose::Pose const &pose, ScoreFunction const &sfxn, ResPairMinimizationData &data_cache) const | core::scoring::methods::TwoBodyEnergy | virtual |
| setup_for_fullatom(pose::Pose &pose) const | core::energy_methods::FaMPSolvEnergy | private |
| setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_minimizing_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &minmap, basic::datacache::BasicDataCache &residue_data_cache, ResSingleMinimizationData &res_data_cache) const | core::scoring::methods::TwoBodyEnergy | virtual |
| setup_for_minimizing_for_residue_pair(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &minmap, ResSingleMinimizationData const &res1_data_cache, ResSingleMinimizationData const &res2_data_cache, ResPairMinimizationData &data_cache) const | core::scoring::methods::TwoBodyEnergy | virtual |
| setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_scoring(pose::Pose &pose, core::scoring::ScoreFunction const &) const override | core::energy_methods::FaMPSolvEnergy | virtual |
| setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data) const | core::scoring::methods::TwoBodyEnergy | virtual |
| setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) const | core::scoring::methods::TwoBodyEnergy | |
| core::scoring::methods::EnergyMethod::setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_scoring_for_residue_pair(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResSingleMinimizationData const &minsingle_data1, ResSingleMinimizationData const &minsingle_data2, pose::Pose const &pose, ScoreFunction const &sfxn, ResPairMinimizationData &data_cache) const | core::scoring::methods::TwoBodyEnergy | virtual |
| ShortRangeTwoBodyEnergy(EnergyMethodCreatorOP) | core::scoring::methods::ShortRangeTwoBodyEnergy | |
| show_additional_info(std::ostream &, pose::Pose &, bool) const | core::scoring::methods::EnergyMethod | virtual |
| sidechain_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::methods::TwoBodyEnergy | virtual |
| solv(int atom1type, int atom2type, Real dis) const | core::energy_methods::FaMPSolvEnergy | private |
| solv1_ | core::energy_methods::FaMPSolvEnergy | private |
| solv2_ | core::energy_methods::FaMPSolvEnergy | private |
| solv_deriv(conformation::Atom const &atom, Real dis) const | core::energy_methods::FaMPSolvEnergy | private |
| solv_piece(int atom1type, Real d) const | core::energy_methods::FaMPSolvEnergy | private |
| solvationE(conformation::Atom const &atom1, conformation::Atom const &atom2, Real dis2, Real &solvE1, Real &solvE2, Real &membsolvE1, Real &membsolvE2) const | core::energy_methods::FaMPSolvEnergy | private |
| TwoBodyEnergy(EnergyMethodCreatorOP) | core::scoring::methods::TwoBodyEnergy | |
| update_residue_for_packing(pose::Pose &, Size resid) const | core::scoring::methods::EnergyMethod | virtual |
| use_extended_intrares_energy_interface() const | core::scoring::methods::TwoBodyEnergy | virtual |
| use_extended_residue_pair_energy_interface() const | core::scoring::methods::TwoBodyEnergy | virtual |
| version() const override | core::energy_methods::FaMPSolvEnergy | privatevirtual |
| ~ContextDependentTwoBodyEnergy() override | core::scoring::methods::ContextDependentTwoBodyEnergy | |
| ~ShortRangeTwoBodyEnergy() override | core::scoring::methods::ShortRangeTwoBodyEnergy | |
| ~TwoBodyEnergy() override | core::scoring::methods::TwoBodyEnergy |
1.9.1