core::pack::rotamers::SingleLigandRotamerLibrary Member List

This is the complete list of members for core::pack::rotamers::SingleLigandRotamerLibrary, including all inherited members.

assign_random_rotamer_with_bias(conformation::Residue const &, pose::Pose const &, numeric::random::RandomGenerator &, dunbrack::ChiVector &, bool) const override	core::pack::rotamers::SingleLigandRotamerLibrary	inlinevirtual
atom_positions_	core::pack::rotamers::SingleLigandRotamerLibrary	private
atoms_w_dof_derivatives(conformation::Residue const &rsd, pose::Pose const &pose) const override	core::pack::rotamers::SingleLigandRotamerLibrary	virtual
best_rotamer_energy(conformation::Residue const &rsd, pose::Pose const &pose, bool curr_rotamer_only) const override	core::pack::rotamers::SingleLigandRotamerLibrary	virtual
build_base_rotamers(chemical::ResidueType const &restype, RotamerVector &base_rotamers) const	core::pack::rotamers::SingleLigandRotamerLibrary
bump_check(core::conformation::ResidueCOP rotamer, core::Size resid, scoring::ScoreFunction const &sf, pose::Pose const &pose, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph) const	core::pack::rotamers::SingleResidueRotamerLibrary	virtual
bump_filter(RotamerVector &rotamers, core::Size resid, scoring::ScoreFunction const &sf, pose::Pose const &pose, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph) const	core::pack::rotamers::SingleResidueRotamerLibrary	virtual
compute_proton_chi_samplings(chemical::ResidueType const &concrete_residue, pack::task::ResidueLevelTask const &rlt, bool buried) const	core::pack::rotamers::SingleResidueRotamerLibrary	virtual
current_rotamer(RotamerVector &rotamers, core::Size resid, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue) const	core::pack::rotamers::SingleResidueRotamerLibrary	virtual
emergency_rotamer(RotamerVector &rotamers, core::Size resid, pose::Pose const &pose, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue) const	core::pack::rotamers::SingleResidueRotamerLibrary	virtual
expand_proton_chis(utility::vector1< utility::vector1< core::Real > > const &sampling, chemical::ResidueType const &concrete_residue, core::Size max_rotamers=5000) const	core::pack::rotamers::SingleResidueRotamerLibrary	virtual
fill_missing_atoms(utility::vector1< bool > missing, conformation::ResidueOP rsd, utility::vector1< bool > &missed) const	core::pack::rotamers::SingleLigandRotamerLibrary	private
fill_rotamer_vector(pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, pack::task::PackerTask const &task, utility::graph::GraphCOP, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue, utility::vector1< utility::vector1< Real > > const &extra_chi_steps, bool buried, RotamerVector &rotamers) const override	core::pack::rotamers::SingleLigandRotamerLibrary	virtual
get_atom_positions() const	core::pack::rotamers::SingleLigandRotamerLibrary	inline
get_reference_energy() const	core::pack::rotamers::SingleLigandRotamerLibrary	inline
init_from_file(std::string const &filename, chemical::ResidueType const &restype)	core::pack::rotamers::SingleLigandRotamerLibrary	virtual
init_from_vector(utility::vector1< NamePosMap > const &coordinates)	core::pack::rotamers::SingleLigandRotamerLibrary
operator=(SingleResidueRotamerLibrary const &other)=delete	core::pack::rotamers::SingleResidueRotamerLibrary	private
operator==(SingleResidueRotamerLibrary const &) const	core::pack::rotamers::SingleResidueRotamerLibrary	virtual
ref_energy_	core::pack::rotamers::SingleLigandRotamerLibrary	private
rotamer_energy(conformation::Residue const &rsd, pose::Pose const &pose, TorsionEnergy &tenergy) const override	core::pack::rotamers::SingleLigandRotamerLibrary	virtual
rotamer_energy_deriv(conformation::Residue const &rsd, pose::Pose const &pose, core::id::TorsionID const &tor_id, TorsionEnergy &tderiv) const override	core::pack::rotamers::SingleLigandRotamerLibrary	virtual
set_reference_energy(Real ref_E_in)	core::pack::rotamers::SingleLigandRotamerLibrary	inline
SingleLigandRotamerLibrary()	core::pack::rotamers::SingleLigandRotamerLibrary
SingleResidueRotamerLibrary(SingleResidueRotamerLibrary const &)=delete	core::pack::rotamers::SingleResidueRotamerLibrary	private
SingleResidueRotamerLibrary()	core::pack::rotamers::SingleResidueRotamerLibrary	inline
virtual_sidechain(RotamerVector const &rotamers, core::Size resid, pose::Pose const &pose, task::PackerTask const &task, chemical::ResidueTypeCOP concrete_residue, conformation::Residue const &existing_residue) const	core::pack::rotamers::SingleResidueRotamerLibrary
write_to_file(utility::io::ozstream &out) const override	core::pack::rotamers::SingleLigandRotamerLibrary	virtual
~SingleLigandRotamerLibrary() override	core::pack::rotamers::SingleLigandRotamerLibrary
~SingleResidueRotamerLibrary() override	core::pack::rotamers::SingleResidueRotamerLibrary