protocols::indexed_structure_store::search::StructurePairQuery Class Reference

#include <QueryDatabase.hh>

Public Member Functions
	StructurePairQuery (ndarray::Array< SearchReal, 3, 3 > query_coordinates_a, ndarray::Array< SearchReal, 3, 3 > query_coordinates_b, SearchReal rmsd_tolerance_)
	StructurePairQuery (ndarray::Array< SearchReal, 3, 3 > query_coordinates_a, ndarray::Array< SearchReal, 3, 3 > query_coordinates_b, SearchReal rmsd_tolerance_, Index min_primary_distance_, Index max_primary_distance_)
void	init (ndarray::Array< SearchReal, 3, 3 > query_coordinates_a, ndarray::Array< SearchReal, 3, 3 > query_coordinates_b)

Public Attributes
Index	n_entry_a
Index	n_entry_b
CoordinateMatrix	q_buffer_a
CoordinateMatrix	q_buffer_b
Index	c_per_entry
SearchReal	rmsd_tolerance
bool	limit_primary_distance
Index	min_primary_distance
Index	max_primary_distance

Private Types
typedef Eigen::Matrix< SearchReal, 3, 1 >	Coordinate
typedef Eigen::Matrix< SearchReal, 3, Eigen::Dynamic >	CoordinateMatrix

Member Typedef Documentation

Coordinate

typedef Eigen::Matrix<SearchReal, 3, 1> protocols::indexed_structure_store::search::StructurePairQuery::Coordinate

private

CoordinateMatrix

typedef Eigen::Matrix<SearchReal, 3, Eigen::Dynamic> protocols::indexed_structure_store::search::StructurePairQuery::CoordinateMatrix

private

Constructor & Destructor Documentation

StructurePairQuery() [1/2]

protocols::indexed_structure_store::search::StructurePairQuery::StructurePairQuery	(	ndarray::Array< SearchReal, 3, 3 >	query_coordinates_a,
		ndarray::Array< SearchReal, 3, 3 >	query_coordinates_b,
		SearchReal	rmsd_tolerance_
	)

References init().

StructurePairQuery() [2/2]

protocols::indexed_structure_store::search::StructurePairQuery::StructurePairQuery	(	ndarray::Array< SearchReal, 3, 3 >	query_coordinates_a,
		ndarray::Array< SearchReal, 3, 3 >	query_coordinates_b,
		SearchReal	rmsd_tolerance_,
		Index	min_primary_distance_,
		Index	max_primary_distance_
	)

References init().

Member Function Documentation

init()

void protocols::indexed_structure_store::search::StructurePairQuery::init	(	ndarray::Array< SearchReal, 3, 3 >	query_coordinates_a,
		ndarray::Array< SearchReal, 3, 3 >	query_coordinates_b
	)

References c_per_entry, n_entry_a, n_entry_b, q_buffer_a, and q_buffer_b.

Referenced by StructurePairQuery().

Member Data Documentation

c_per_entry

Index protocols::indexed_structure_store::search::StructurePairQuery::c_per_entry

Referenced by protocols::indexed_structure_store::search::bind_QueryDatabase(), init(), and protocols::indexed_structure_store::search::PairQueryExecutor::perform_structure_rmsd().

limit_primary_distance

bool protocols::indexed_structure_store::search::StructurePairQuery::limit_primary_distance

Referenced by protocols::indexed_structure_store::search::PairQueryExecutor::execute_structure().

max_primary_distance

Index protocols::indexed_structure_store::search::StructurePairQuery::max_primary_distance

Referenced by protocols::indexed_structure_store::search::PairQueryExecutor::execute_structure().

min_primary_distance

Index protocols::indexed_structure_store::search::StructurePairQuery::min_primary_distance

n_entry_a

Index protocols::indexed_structure_store::search::StructurePairQuery::n_entry_a

Referenced by protocols::indexed_structure_store::search::bind_QueryDatabase(), protocols::indexed_structure_store::search::PairQueryExecutor::execute_structure(), and init().

n_entry_b

Index protocols::indexed_structure_store::search::StructurePairQuery::n_entry_b

Referenced by protocols::indexed_structure_store::search::bind_QueryDatabase(), protocols::indexed_structure_store::search::PairQueryExecutor::execute_structure(), and init().

q_buffer_a

CoordinateMatrix protocols::indexed_structure_store::search::StructurePairQuery::q_buffer_a

Referenced by protocols::indexed_structure_store::search::bind_QueryDatabase(), init(), and protocols::indexed_structure_store::search::PairQueryExecutor::perform_structure_rmsd().

q_buffer_b

CoordinateMatrix protocols::indexed_structure_store::search::StructurePairQuery::q_buffer_b

Referenced by protocols::indexed_structure_store::search::bind_QueryDatabase(), init(), and protocols::indexed_structure_store::search::PairQueryExecutor::perform_structure_rmsd().

rmsd_tolerance

SearchReal protocols::indexed_structure_store::search::StructurePairQuery::rmsd_tolerance

Referenced by protocols::indexed_structure_store::search::bind_QueryDatabase(), and protocols::indexed_structure_store::search::PairQueryExecutor::execute_structure().

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The documentation for this class was generated from the following files:

• src/protocols/indexed_structure_store/search/QueryDatabase.hh
• src/protocols/indexed_structure_store/search/QueryDatabase.cc