protocols::scoring::VDW_CachedRepScreenInfo Class Reference

#include <VDW_CachedRepScreenInfo.hh>

Inheritance diagram for protocols::scoring::VDW_CachedRepScreenInfo:

Public Member Functions
	VDW_CachedRepScreenInfo ()
	VDW_CachedRepScreenInfo (core::pose::Pose const &pose)
	VDW_CachedRepScreenInfo (VDW_CachedRepScreenInfo const &src)
	~VDW_CachedRepScreenInfo () override
basic::datacache::CacheableDataOP	clone () const override
void	read_in_VDW_rep_screen_pose (core::pose::rna::VDW_RepScreenInfo &VDW_rep_screen_info) const
void	read_in_VDW_rep_screen_pose_from_command_line () const
void	read_in_VDW_rep_screen_pose_from_options (utility::options::OptionCollection const &options) const
utility::vector1< core::pose::rna::VDW_RepScreenInfo > &	VDW_rep_screen_info_list () const
core::pose::rna::VDW_GridCOP	VDW_screen_bin () const

Private Attributes
utility::vector1< core::pose::rna::VDW_RepScreenInfo >	VDW_rep_screen_info_list_
core::pose::rna::VDW_GridCOP	VDW_screen_bin_

Constructor & Destructor Documentation

VDW_CachedRepScreenInfo() [1/3]

protocols::scoring::VDW_CachedRepScreenInfo::VDW_CachedRepScreenInfo

(

)

References read_in_VDW_rep_screen_pose_from_command_line().

Referenced by protocols::scoring::set_vdw_cached_rep_screen_info_from_pose().

VDW_CachedRepScreenInfo() [2/3]

protocols::scoring::VDW_CachedRepScreenInfo::VDW_CachedRepScreenInfo

(

core::pose::Pose const &

pose

)

References protocols::scoring::const_vdw_cached_rep_screen_info_from_pose(), VDW_rep_screen_info_list(), VDW_rep_screen_info_list_, VDW_screen_bin(), and VDW_screen_bin_.

VDW_CachedRepScreenInfo() [3/3]

protocols::scoring::VDW_CachedRepScreenInfo::VDW_CachedRepScreenInfo

(

VDW_CachedRepScreenInfo const &

src

)

Copy constructors must copy all data, not just some...

~VDW_CachedRepScreenInfo()

protocols::scoring::VDW_CachedRepScreenInfo::~VDW_CachedRepScreenInfo ( )

overridedefault

Member Function Documentation

clone()

basic::datacache::CacheableDataOP protocols::scoring::VDW_CachedRepScreenInfo::clone ( ) const

override

read_in_VDW_rep_screen_pose()

void protocols::scoring::VDW_CachedRepScreenInfo::read_in_VDW_rep_screen_pose

(

core::pose::rna::VDW_RepScreenInfo &

VDW_rep_screen_info

)

const

References core::pose::rna::add_virtual_O2Prime_hydrogen(), core::chemical::FA_STANDARD, core::pose::rna::make_phosphate_nomenclature_matches_mini(), core::import_pose::PDB_file, core::import_pose::pose_from_file(), core::pose::rna::VDW_RepScreenInfo::pose_name, protocols::TR(), and core::pose::rna::VDW_RepScreenInfo::VDW_pose.

Referenced by read_in_VDW_rep_screen_pose_from_options().

read_in_VDW_rep_screen_pose_from_command_line()

void protocols::scoring::VDW_CachedRepScreenInfo::read_in_VDW_rep_screen_pose_from_command_line

(

)

const

References read_in_VDW_rep_screen_pose_from_options().

Referenced by VDW_CachedRepScreenInfo().

read_in_VDW_rep_screen_pose_from_options()

void protocols::scoring::VDW_CachedRepScreenInfo::read_in_VDW_rep_screen_pose_from_options

(

utility::options::OptionCollection const &

options

)

const

References core::pose::rna::VDW_RepScreenInfo::pose_name, read_in_VDW_rep_screen_pose(), protocols::kinmatch::str(), core::pose::rna::string_to_int(), core::pose::rna::tokenize(), core::pose::rna::VDW_RepScreenInfo::VDW_align_res, VDW_rep_screen_info_list_, and core::pose::rna::VDW_RepScreenInfo::working_align_res.

Referenced by read_in_VDW_rep_screen_pose_from_command_line().

VDW_rep_screen_info_list()

utility::vector1< core::pose::rna::VDW_RepScreenInfo > & protocols::scoring::VDW_CachedRepScreenInfo::VDW_rep_screen_info_list

(

)

const

References VDW_rep_screen_info_list_.

Referenced by protocols::stepwise::modeler::rna::checker::RNA_VDW_BinChecker::FARFAR_setup_using_user_input_VDW_pose(), protocols::scoring::VDW_GridEnergy::finalize_total_energy(), protocols::stepwise::modeler::rna::checker::RNA_VDW_BinChecker::setup_using_user_input_VDW_pose(), and VDW_CachedRepScreenInfo().

VDW_screen_bin()

core::pose::rna::VDW_GridCOP protocols::scoring::VDW_CachedRepScreenInfo::VDW_screen_bin

(

)

const

References VDW_screen_bin_.

Referenced by protocols::scoring::VDW_GridEnergy::finalize_total_energy(), protocols::stepwise::modeler::rna::checker::RNA_VDW_BinChecker::RNA_VDW_BinChecker(), and VDW_CachedRepScreenInfo().

Member Data Documentation

VDW_rep_screen_info_list_

utility::vector1< core::pose::rna::VDW_RepScreenInfo > protocols::scoring::VDW_CachedRepScreenInfo::VDW_rep_screen_info_list_

mutableprivate

Referenced by read_in_VDW_rep_screen_pose_from_options(), VDW_CachedRepScreenInfo(), and VDW_rep_screen_info_list().

VDW_screen_bin_

core::pose::rna::VDW_GridCOP protocols::scoring::VDW_CachedRepScreenInfo::VDW_screen_bin_

private

Referenced by VDW_CachedRepScreenInfo(), and VDW_screen_bin().

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The documentation for this class was generated from the following files:

• src/protocols/scoring/VDW_CachedRepScreenInfo.hh
• src/protocols/scoring/VDW_CachedRepScreenInfo.cc