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Public Member Functions | Static Public Member Functions | Public Attributes | Friends | List of all members
core::scoring::etable::EtableOptions Class Reference

#include <EtableOptions.hh>

Inheritance diagram for core::scoring::etable::EtableOptions:
Inheritance graph
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Public Member Functions

 EtableOptions ()
 
 EtableOptions (utility::options::OptionCollection const &options)
 
 ~EtableOptions () override
 
 EtableOptions (EtableOptions const &src)
 
EtableOptions & operator= (EtableOptions const &src)
 
void show (std::ostream &out) const
 
void parse_my_tag (utility::tag::TagCOP tag)
 
void initialize_from_options ()
 
void initialize_from_options (utility::options::OptionCollection const &options)
 

Static Public Member Functions

static void append_schema_attributes (utility::tag::AttributeList &attributes)
 
static void list_options_read (utility::options::OptionKeyList &option_list)
 

Public Attributes

std::string etable_type
 
bool analytic_etable_evaluation
 
Real max_dis
 
int bins_per_A2
 
Real Wradius
 
Real lj_switch_dis2sigma
 
bool no_lk_polar_desolvation
 
bool proline_N_is_lk_nonpolar
 
Real lj_hbond_OH_donor_dis
 
Real lj_hbond_hdis
 
bool enlarge_h_lj_wdepth
 
bool fa_hatr
 
bool analytic_membetable_evaluation
 

Friends

bool operator< (EtableOptions const &a, EtableOptions const &b)
 
bool operator== (EtableOptions const &a, EtableOptions const &b)
 
std::ostream & operator<< (std::ostream &out, const EtableOptions &options)
 

Constructor & Destructor Documentation

◆ EtableOptions() [1/3]

core::scoring::etable::EtableOptions::EtableOptions ( )

Delegating constructor that passes the global option collection to the other constructor.

◆ EtableOptions() [2/3]

core::scoring::etable::EtableOptions::EtableOptions ( utility::options::OptionCollection const &  options)

References initialize_from_options().

◆ ~EtableOptions()

core::scoring::etable::EtableOptions::~EtableOptions ( )
overridedefault

◆ EtableOptions() [3/3]

core::scoring::etable::EtableOptions::EtableOptions ( EtableOptions const &  src)

Member Function Documentation

◆ append_schema_attributes()

void core::scoring::etable::EtableOptions::append_schema_attributes ( utility::tag::AttributeList &  attributes)
static

Referenced by protocols::parser::ScoreFunctionLoader::provide_xml_schema().

◆ initialize_from_options() [1/2]

void core::scoring::etable::EtableOptions::initialize_from_options ( )

Referenced by EtableOptions().

◆ initialize_from_options() [2/2]

void core::scoring::etable::EtableOptions::initialize_from_options ( utility::options::OptionCollection const &  options)

References analytic_etable_evaluation, analytic_membetable_evaluation, fa_hatr, lj_hbond_hdis, lj_hbond_OH_donor_dis, max_dis, no_lk_polar_desolvation, and core::scoring::etable::TR().

◆ list_options_read()

void core::scoring::etable::EtableOptions::list_options_read ( utility::options::OptionKeyList &  option_list)
static

Referenced by core::scoring::methods::EnergyMethodOptions::list_options_read().

◆ operator=()

EtableOptions & core::scoring::etable::EtableOptions::operator= ( EtableOptions const &  src)

References analytic_etable_evaluation, analytic_membetable_evaluation, bins_per_A2, enlarge_h_lj_wdepth, etable_type, fa_hatr, lj_hbond_hdis, lj_hbond_OH_donor_dis, lj_switch_dis2sigma, max_dis, no_lk_polar_desolvation, proline_N_is_lk_nonpolar, and Wradius.

◆ parse_my_tag()

void core::scoring::etable::EtableOptions::parse_my_tag ( utility::tag::TagCOP  tag)

References lj_hbond_hdis, lj_hbond_OH_donor_dis, and max_dis.

Referenced by protocols::parser::ScoreFunctionLoader::create_scorefxn_from_tag().

◆ show()

void core::scoring::etable::EtableOptions::show ( std::ostream &  out) const

References bins_per_A2, enlarge_h_lj_wdepth, fa_hatr, lj_hbond_hdis, lj_hbond_OH_donor_dis, lj_switch_dis2sigma, max_dis, no_lk_polar_desolvation, core::conformation::membrane::out, proline_N_is_lk_nonpolar, and Wradius.

Friends And Related Function Documentation

◆ operator<

bool operator< ( EtableOptions const &  a,
EtableOptions const &  b 
)
friend

◆ operator<<

std::ostream& operator<< ( std::ostream &  out,
const EtableOptions &  options 
)
friend

◆ operator==

bool operator== ( EtableOptions const &  a,
EtableOptions const &  b 
)
friend

Member Data Documentation

◆ analytic_etable_evaluation

bool core::scoring::etable::EtableOptions::analytic_etable_evaluation

Referenced by initialize_from_options(), and operator=().

◆ analytic_membetable_evaluation

bool core::scoring::etable::EtableOptions::analytic_membetable_evaluation

Referenced by initialize_from_options(), and operator=().

◆ bins_per_A2

int core::scoring::etable::EtableOptions::bins_per_A2

Referenced by operator=(), and show().

◆ enlarge_h_lj_wdepth

bool core::scoring::etable::EtableOptions::enlarge_h_lj_wdepth

Referenced by operator=(), and show().

◆ etable_type

std::string core::scoring::etable::EtableOptions::etable_type

Referenced by core::scoring::ScoringManager::etable(), and operator=().

◆ fa_hatr

bool core::scoring::etable::EtableOptions::fa_hatr

Referenced by initialize_from_options(), operator=(), and show().

◆ lj_hbond_hdis

Real core::scoring::etable::EtableOptions::lj_hbond_hdis

Referenced by initialize_from_options(), operator=(), parse_my_tag(), and show().

◆ lj_hbond_OH_donor_dis

Real core::scoring::etable::EtableOptions::lj_hbond_OH_donor_dis

Referenced by initialize_from_options(), operator=(), parse_my_tag(), and show().

◆ lj_switch_dis2sigma

Real core::scoring::etable::EtableOptions::lj_switch_dis2sigma

Referenced by core::scoring::ScoringManager::make_partially_soft_etable(), operator=(), and show().

◆ max_dis

Real core::scoring::etable::EtableOptions::max_dis

Referenced by core::scoring::etable::Etable::calculate_nblist_distance_thresholds(), core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper::init(), core::pack::guidance_scoreterms::sap::SapConstraintHelper::init(), initialize_from_options(), operator=(), parse_my_tag(), and show().

◆ no_lk_polar_desolvation

bool core::scoring::etable::EtableOptions::no_lk_polar_desolvation

Referenced by core::energy_methods::create_ExactSHOEnergy_from_cmdline(), initialize_from_options(), protocols::stepwise::modeler::initialize_pack_scorefxn(), operator=(), and show().

◆ proline_N_is_lk_nonpolar

bool core::scoring::etable::EtableOptions::proline_N_is_lk_nonpolar

Referenced by core::energy_methods::create_ExactSHOEnergy_from_cmdline(), operator=(), and show().

◆ Wradius

Real core::scoring::etable::EtableOptions::Wradius

Referenced by operator=(), and show().

The documentation for this class was generated from the following files:
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