protocols::frag_picker::quota Namespace Reference

Classes
class	ABEGO_SS_Config
	read a config file for quota selector More...
class	ABEGO_SS_Map
	represents a single pool used by quota selector More...
class	ABEGO_SS_Pool
	represents a single pool used by quota selector More...
class	QuotaCollector
	A base class for collecting fragments. More...
class	QuotaConfig
	read a config file for quota selector More...
class	QuotaPool
	represents a single pool used by quota selector More...
struct	quota_limits_sorter_biggest_first
struct	quota_limits_sorter_smallest_first
struct	missing_fraction_sorter_biggest_first
class	QuotaSelector
	selects a given number of fragments using a quota scheme More...
class	SecondaryStructurePool
	represents a single pool used by quota selector More...

Typedefs
typedef utility::pointer::shared_ptr< ABEGO_SS_Map >	ABEGO_SS_MapOP
typedef utility::pointer::shared_ptr< ABEGO_SS_Map const >	ABEGO_SS_MapCOP
typedef utility::pointer::shared_ptr< ABEGO_SS_Pool >	ABEGO_SS_PoolOP
typedef utility::pointer::shared_ptr< ABEGO_SS_Pool const >	ABEGO_SS_PoolCOP
typedef LazySortedVector1< std::pair< FragmentCandidateOP, scores::FragmentScoreMapOP >, CompareByScoreCombination >	BoundedQuotaContainer
typedef utility::pointer::shared_ptr< BoundedQuotaContainer >	BoundedQuotaContainerOP
typedef utility::pointer::shared_ptr< QuotaCollector >	QuotaCollectorOP
typedef utility::pointer::shared_ptr< QuotaCollector const >	QuotaCollectorCOP
typedef utility::pointer::shared_ptr< QuotaPool >	QuotaPoolOP
typedef utility::pointer::shared_ptr< QuotaPool const >	QuotaPoolCOP
typedef utility::pointer::shared_ptr< QuotaSelector >	QuotaSelectorOP
typedef utility::pointer::shared_ptr< QuotaSelector const >	QuotaSelectorCOP
typedef utility::pointer::shared_ptr< SecondaryStructurePool >	SecondaryStructurePoolOP
typedef utility::pointer::shared_ptr< SecondaryStructurePool const >	SecondaryStructurePoolCOP

Functions
static basic::Tracer	trABEGO_SS_Config ("protocols.frag_picker.quota.ABEGO_SS_Config")
core::Size	torsion2big_bin_id (core::Real const phi, core::Real const psi, core::Real const omega)
core::Size	abego_index (char abego_class)
core::Size	ss_index (char ss_class)
static basic::Tracer	trABEGO_SS_Pool ("protocols.frag_picker.quota.ABEGO_SS_Pool")
static basic::Tracer	trQuotaCollector ("protocols.frag_picker.quota.QuotaCollector")
static basic::Tracer	trQuotaConfig ("protocols.frag_picker.quota.QuotaConfig")
static basic::Tracer	trQuotaSelector ("protocols.frag_picker.quota.QuotaSelector")
static basic::Tracer	trSecondaryStructurePool ("protocols.frag_picker.quota.SecondaryStructurePool")

Variables
struct protocols::frag_picker::quota::quota_limits_sorter_biggest_first	mysorter_biggest_first
struct protocols::frag_picker::quota::quota_limits_sorter_smallest_first	mysorter_smallest_first
struct protocols::frag_picker::quota::missing_fraction_sorter_biggest_first	mysorter_missing_fraction_biggest_first

Typedef Documentation

ABEGO_SS_MapCOP

typedef utility::pointer::shared_ptr<ABEGO_SS_Map const> protocols::frag_picker::quota::ABEGO_SS_MapCOP

ABEGO_SS_MapOP

typedef utility::pointer::shared_ptr<ABEGO_SS_Map> protocols::frag_picker::quota::ABEGO_SS_MapOP

ABEGO_SS_PoolCOP

typedef utility::pointer::shared_ptr<ABEGO_SS_Pool const> protocols::frag_picker::quota::ABEGO_SS_PoolCOP

ABEGO_SS_PoolOP

typedef utility::pointer::shared_ptr<ABEGO_SS_Pool> protocols::frag_picker::quota::ABEGO_SS_PoolOP

BoundedQuotaContainer

typedef LazySortedVector1< std::pair< FragmentCandidateOP, scores::FragmentScoreMapOP >, CompareByScoreCombination > protocols::frag_picker::quota::BoundedQuotaContainer

BoundedQuotaContainerOP

typedef utility::pointer::shared_ptr< BoundedQuotaContainer > protocols::frag_picker::quota::BoundedQuotaContainerOP

QuotaCollectorCOP

typedef utility::pointer::shared_ptr<QuotaCollector const> protocols::frag_picker::quota::QuotaCollectorCOP

QuotaCollectorOP

typedef utility::pointer::shared_ptr<QuotaCollector> protocols::frag_picker::quota::QuotaCollectorOP

QuotaPoolCOP

typedef utility::pointer::shared_ptr<QuotaPool const> protocols::frag_picker::quota::QuotaPoolCOP

QuotaPoolOP

typedef utility::pointer::shared_ptr<QuotaPool> protocols::frag_picker::quota::QuotaPoolOP

QuotaSelectorCOP

typedef utility::pointer::shared_ptr<QuotaSelector const> protocols::frag_picker::quota::QuotaSelectorCOP

QuotaSelectorOP

typedef utility::pointer::shared_ptr<QuotaSelector> protocols::frag_picker::quota::QuotaSelectorOP

SecondaryStructurePoolCOP

typedef utility::pointer::shared_ptr<SecondaryStructurePool const> protocols::frag_picker::quota::SecondaryStructurePoolCOP

SecondaryStructurePoolOP

typedef utility::pointer::shared_ptr<SecondaryStructurePool> protocols::frag_picker::quota::SecondaryStructurePoolOP

Function Documentation

abego_index()

core::Size protocols::frag_picker::quota::abego_index

(

char

abego_class

)

References core::conformation::membrane::out.

Referenced by protocols::frag_picker::quota::ABEGO_SS_Config::ABEGO_SS_Config(), and protocols::frag_picker::quota::ABEGO_SS_Map::check_status().

ss_index()

core::Size protocols::frag_picker::quota::ss_index

(

char

ss_class

)

References core::conformation::membrane::out.

Referenced by protocols::frag_picker::quota::ABEGO_SS_Config::ABEGO_SS_Config(), protocols::frag_picker::quota::ABEGO_SS_Map::check_status(), protocols::indexed_structure_store::FragmentStoreManager::get_dssp_fragCt(), protocols::indexed_structure_store::SSHashedFragmentStore::get_hits_below_rms(), and protocols::dna::DnaInterfacePacker::protein_scan().

torsion2big_bin_id()

core::Size protocols::frag_picker::quota::torsion2big_bin_id	(	core::Real const	phi,
		core::Real const	psi,
		core::Real const	omega
	)

References core::scoring::omega.

Referenced by protocols::frag_picker::quota::ABEGO_SS_Pool::could_be_accepted(), protocols::frag_picker::scores::ABEGO_SS_Score::do_caching(), and protocols::frag_picker::scores::ABEGO_SS_Score::score().

trABEGO_SS_Config()

static basic::Tracer protocols::frag_picker::quota::trABEGO_SS_Config ( "protocols.frag_picker.quota.ABEGO_SS_Config"  )

static

Referenced by protocols::frag_picker::quota::ABEGO_SS_Config::ABEGO_SS_Config().

trABEGO_SS_Pool()

static basic::Tracer protocols::frag_picker::quota::trABEGO_SS_Pool ( "protocols.frag_picker.quota.ABEGO_SS_Pool"  )

static

Referenced by protocols::frag_picker::quota::ABEGO_SS_Pool::ABEGO_SS_Pool().

trQuotaCollector()

static basic::Tracer protocols::frag_picker::quota::trQuotaCollector ( "protocols.frag_picker.quota.QuotaCollector"  )

static

Referenced by protocols::frag_picker::quota::QuotaCollector::attach_secondary_structure_pools(), and protocols::frag_picker::quota::QuotaCollector::get_candidates().

trQuotaConfig()

static basic::Tracer protocols::frag_picker::quota::trQuotaConfig ( "protocols.frag_picker.quota.QuotaConfig"  )

static

Referenced by protocols::frag_picker::quota::QuotaConfig::QuotaConfig().

trQuotaSelector()

static basic::Tracer protocols::frag_picker::quota::trQuotaSelector ( "protocols.frag_picker.quota.QuotaSelector"  )

static

Referenced by protocols::frag_picker::quota::QuotaSelector::next_from_pool(), protocols::frag_picker::quota::QuotaSelector::push_the_limits(), protocols::frag_picker::quota::QuotaSelector::push_the_limits_to_the_winner(), protocols::frag_picker::quota::QuotaSelector::QuotaSelector(), protocols::frag_picker::quota::QuotaSelector::select_fragments_200(), and protocols::frag_picker::quota::QuotaSelector::select_fragments_25_200().

trSecondaryStructurePool()

static basic::Tracer protocols::frag_picker::quota::trSecondaryStructurePool ( "protocols.frag_picker.quota.SecondaryStructurePool"  )

static

Referenced by protocols::frag_picker::quota::SecondaryStructurePool::SecondaryStructurePool().

Variable Documentation

mysorter_biggest_first

struct protocols::frag_picker::quota::quota_limits_sorter_biggest_first protocols::frag_picker::quota::mysorter_biggest_first

Referenced by protocols::frag_picker::quota::QuotaSelector::push_the_limits(), and protocols::frag_picker::quota::QuotaSelector::push_the_limits_to_the_winner().

mysorter_missing_fraction_biggest_first

struct protocols::frag_picker::quota::missing_fraction_sorter_biggest_first protocols::frag_picker::quota::mysorter_missing_fraction_biggest_first

Referenced by protocols::frag_picker::quota::QuotaSelector::push_the_limits().

mysorter_smallest_first

struct protocols::frag_picker::quota::quota_limits_sorter_smallest_first protocols::frag_picker::quota::mysorter_smallest_first