protocols::jd3::chunk_library Namespace Reference

Classes
class	ChunkLibraryInnerLarvalJob
class	ChunkLibraryPreliminaryLarvalJob
class	ChunkLibraryJobQueen
	The ChunkLibraryJobQueen is meant to handle the most common form of Rosetta jobs where a protocol is applied to a single input structure to generate a single output structure. Most JobQueens in Rosetta will to derive from this JobQueen. To make the process of deriving new JobQueens easy, this class's API has been carefully designed to be easy to work with and the class itself has been designed to do as much heavy lifting as possible and to leave only the responsibilities that the ChunkLibraryJobQueen could not perform to the derived classes. More...
class	MoverAndChunkLibraryJob
class	ChunkLibraryJobResult

Typedefs
typedef utility::pointer::shared_ptr< ChunkLibraryInnerLarvalJob >	ChunkLibraryInnerLarvalJobOP
typedef utility::pointer::shared_ptr< ChunkLibraryInnerLarvalJob const >	ChunkLibraryInnerLarvalJobCOP
typedef utility::vector1< ChunkLibraryInnerLarvalJobOP >	ChunkLibraryInnerLarvalJobs
typedef utility::pointer::shared_ptr< ChunkLibraryJobQueen >	ChunkLibraryJobQueenOP
typedef utility::pointer::shared_ptr< ChunkLibraryJobQueen const >	ChunkLibraryJobQueenCOP
typedef utility::pointer::shared_ptr< PreliminaryLarvalJob >	PreliminaryLarvalJobOP
typedef utility::pointer::shared_ptr< PreliminaryLarvalJob const >	PreliminaryLarvalJobCOP
typedef std::list< ChunkLibraryPreliminaryLarvalJob >	ChunkLibraryPreliminaryLarvalJobs
typedef utility::pointer::shared_ptr< MoverAndChunkLibraryJob >	MoverAndChunkLibraryJobOP
typedef utility::pointer::shared_ptr< MoverAndChunkLibraryJob const >	MoverAndChunkLibraryJobCOP
typedef utility::pointer::shared_ptr< ChunkLibraryJobResult >	ChunkLibraryJobResultOP
typedef utility::pointer::shared_ptr< ChunkLibraryJobResult const >	ChunkLibraryJobResultCOP

Functions
std::ostream &	operator<< (std::ostream &out, const ChunkLibraryInnerLarvalJob &inner_job)
utility::excn::Exception	bad_inner_job_exception ()
utility::options::OptionTypes	option_type_from_key (utility::options::OptionKey const &key)
utility::tag::XMLSchemaType	value_attribute_type_for_option (utility::options::OptionTypes const &key)

Typedef Documentation

ChunkLibraryInnerLarvalJobCOP

typedef utility::pointer::shared_ptr< ChunkLibraryInnerLarvalJob const > protocols::jd3::chunk_library::ChunkLibraryInnerLarvalJobCOP

ChunkLibraryInnerLarvalJobOP

typedef utility::pointer::shared_ptr< ChunkLibraryInnerLarvalJob > protocols::jd3::chunk_library::ChunkLibraryInnerLarvalJobOP

ChunkLibraryInnerLarvalJobs

typedef utility::vector1< ChunkLibraryInnerLarvalJobOP > protocols::jd3::chunk_library::ChunkLibraryInnerLarvalJobs

ChunkLibraryJobQueenCOP

typedef utility::pointer::shared_ptr< ChunkLibraryJobQueen const > protocols::jd3::chunk_library::ChunkLibraryJobQueenCOP

ChunkLibraryJobQueenOP

typedef utility::pointer::shared_ptr< ChunkLibraryJobQueen > protocols::jd3::chunk_library::ChunkLibraryJobQueenOP

ChunkLibraryJobResultCOP

typedef utility::pointer::shared_ptr< ChunkLibraryJobResult const > protocols::jd3::chunk_library::ChunkLibraryJobResultCOP

ChunkLibraryJobResultOP

typedef utility::pointer::shared_ptr< ChunkLibraryJobResult > protocols::jd3::chunk_library::ChunkLibraryJobResultOP

ChunkLibraryPreliminaryLarvalJobs

typedef std::list< ChunkLibraryPreliminaryLarvalJob > protocols::jd3::chunk_library::ChunkLibraryPreliminaryLarvalJobs

MoverAndChunkLibraryJobCOP

typedef utility::pointer::shared_ptr< MoverAndChunkLibraryJob const > protocols::jd3::chunk_library::MoverAndChunkLibraryJobCOP

MoverAndChunkLibraryJobOP

typedef utility::pointer::shared_ptr< MoverAndChunkLibraryJob > protocols::jd3::chunk_library::MoverAndChunkLibraryJobOP

PreliminaryLarvalJobCOP

typedef utility::pointer::shared_ptr< PreliminaryLarvalJob const > protocols::jd3::chunk_library::PreliminaryLarvalJobCOP

PreliminaryLarvalJobOP

typedef utility::pointer::shared_ptr< PreliminaryLarvalJob > protocols::jd3::chunk_library::PreliminaryLarvalJobOP

Function Documentation

bad_inner_job_exception()

utility::excn::Exception protocols::jd3::chunk_library::bad_inner_job_exception

(

)

Referenced by protocols::jd3::chunk_library::ChunkLibraryJobQueen::create_and_store_output_specification_for_job_result(), protocols::jd3::chunk_library::ChunkLibraryJobQueen::create_output_specification_for_job_result(), protocols::jd3::chunk_library::ChunkLibraryJobQueen::has_job_previously_been_output(), protocols::jd3::chunk_library::ChunkLibraryJobQueen::mature_larval_job(), protocols::jd3::chunk_library::ChunkLibraryJobQueen::note_job_completed(), and protocols::jd3::chunk_library::ChunkLibraryJobQueen::pose_for_job().

operator<<()

std::ostream& protocols::jd3::chunk_library::operator<<	(	std::ostream &	out,
		const ChunkLibraryInnerLarvalJob &	inner_job
	)

References core::conformation::membrane::out, and protocols::jd3::chunk_library::ChunkLibraryInnerLarvalJob::show().

option_type_from_key()

utility::options::OptionTypes protocols::jd3::chunk_library::option_type_from_key

(

utility::options::OptionKey const &

key

)

Referenced by protocols::jd3::chunk_library::ChunkLibraryJobQueen::job_definition_xsd(), and protocols::jd3::chunk_library::ChunkLibraryJobQueen::options_from_tag().

value_attribute_type_for_option()

utility::tag::XMLSchemaType protocols::jd3::chunk_library::value_attribute_type_for_option

(

utility::options::OptionTypes const &

key

)

Referenced by protocols::jd3::chunk_library::ChunkLibraryJobQueen::job_definition_xsd().