| atom(Size const n) const override | core::scoring::constraints::AtomPairConstraint | inlinevirtual |
| atom1() const | core::scoring::constraints::AtomPairConstraint | inline |
| atom1(AtomID newid) const | core::scoring::constraints::AtomPairConstraint | protected |
| atom1_ | core::scoring::constraints::AtomPairConstraint | mutableprivate |
| atom2() const | core::scoring::constraints::AtomPairConstraint | inline |
| atom2(AtomID newid) const | core::scoring::constraints::AtomPairConstraint | protected |
| atom2_ | core::scoring::constraints::AtomPairConstraint | private |
| AtomID typedef | core::scoring::constraints::Constraint | |
| AtomPairConstraint() | core::scoring::constraints::AtomPairConstraint | |
| AtomPairConstraint(AtomID const &a1, AtomID const &a2, core::scoring::func::FuncOP func, ScoreType scoretype=atom_pair_constraint) | core::scoring::constraints::AtomPairConstraint | |
| AtomPairConstraint(AtomPairConstraint const &src) | core::scoring::constraints::AtomPairConstraint | protected |
| choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &) | core::scoring::constraints::Constraint | virtual |
| clone() const override | core::scoring::constraints::NamedAtomPairConstraint | virtual |
| core::scoring::constraints::AtomPairConstraint::clone(func::FuncOP func) const override | core::scoring::constraints::AtomPairConstraint | virtual |
| Constraint(ScoreType const &t) | core::scoring::constraints::Constraint | |
| dfunc(Real const theta) const | core::scoring::constraints::AtomPairConstraint | private |
| dist(pose::Pose const &pose) const override | core::scoring::constraints::AtomPairConstraint | virtual |
| dist(core::scoring::func::XYZ_Func const &xyz) const override | core::scoring::constraints::AtomPairConstraint | virtual |
| dist(core::scoring::func::XYZ_Func const &) const=0 | core::scoring::constraints::AtomPairConstraint | |
| dist(core::pose::Pose const &) const | core::scoring::constraints::AtomPairConstraint | |
| effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp) const override | core::scoring::constraints::AtomPairConstraint | virtual |
| fill_f1_f2(AtomID const &atom, core::scoring::func::XYZ_Func const &xyz, Vector &F1, Vector &F2, EnergyMap const &weights) const override | core::scoring::constraints::AtomPairConstraint | virtual |
| func(Real const theta) const | core::scoring::constraints::AtomPairConstraint | private |
| func_ | core::scoring::constraints::AtomPairConstraint | private |
| get_func() const override | core::scoring::constraints::AtomPairConstraint | virtual |
| named_atom1_ | core::scoring::constraints::NamedAtomPairConstraint | private |
| named_atom2_ | core::scoring::constraints::NamedAtomPairConstraint | private |
| NamedAtomPairConstraint(id::NamedAtomID const &a1, id::NamedAtomID const &a2, func::FuncOP func, ScoreType scoretype=atom_pair_constraint) | core::scoring::constraints::NamedAtomPairConstraint | |
| natoms() const override | core::scoring::constraints::AtomPairConstraint | inlinevirtual |
| operator!=(Constraint const &other) const | core::scoring::constraints::Constraint | |
| operator==(Constraint const &rhs) const override | core::scoring::constraints::NamedAtomPairConstraint | virtual |
| read_constraint(std::istream &, core::pose::Pose const &) | core::scoring::constraints::Constraint | virtual |
| read_data(std::istream &) | core::scoring::constraints::Constraint | virtual |
| read_def(std::istream &in, pose::Pose const &pose, func::FuncFactory const &func_factory) override | core::scoring::constraints::NamedAtomPairConstraint | virtual |
| remap_resid(core::id::SequenceMapping const &seqmap) const override | core::scoring::constraints::NamedAtomPairConstraint | virtual |
| remapped_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP map=nullptr) const override | core::scoring::constraints::NamedAtomPairConstraint | virtual |
| residues() const | core::scoring::constraints::Constraint | virtual |
| same_type_as_me(Constraint const &other) const override | core::scoring::constraints::NamedAtomPairConstraint | virtual |
| score(Vector const &xyz1, Vector const &xyz2) const | core::scoring::constraints::AtomPairConstraint | |
| score(core::scoring::func::XYZ_Func const &xyz, EnergyMap const &, EnergyMap &emap) const override | core::scoring::constraints::AtomPairConstraint | virtual |
| score(pose::Pose const &pose) const override | core::scoring::constraints::AtomPairConstraint | virtual |
| score(core::scoring::func::XYZ_Func const &xyz_func, EnergyMap const &weights, EnergyMap &emap) const=0 | core::scoring::constraints::AtomPairConstraint | |
| score(pose::Pose const &pose) const | core::scoring::constraints::AtomPairConstraint | |
| score(pose::Pose const &pose, EnergyMap const &weights) const | core::scoring::constraints::AtomPairConstraint | |
| core::scoring::constraints::Constraint::score(pose::Pose const &pose, EnergyMap const &weights) const | core::scoring::constraints::Constraint | virtual |
| score_type() const | core::scoring::constraints::Constraint | inline |
| score_type_ | core::scoring::constraints::Constraint | private |
| set_func(func::FuncOP setting) | core::scoring::constraints::AtomPairConstraint | protected |
| setup_for_derivatives(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const | core::scoring::constraints::Constraint | virtual |
| setup_for_scoring(func::XYZ_Func const &, ScoreFunction const &) const override | core::scoring::constraints::NamedAtomPairConstraint | virtual |
| show(std::ostream &out) const override | core::scoring::constraints::AtomPairConstraint | virtual |
| show_def(std::ostream &out, pose::Pose const &pose) const override | core::scoring::constraints::NamedAtomPairConstraint | virtual |
| show_def_nopose(std::ostream &out) const | core::scoring::constraints::NamedAtomPairConstraint | |
| show_violations(std::ostream &out, pose::Pose const &pose, Size verbose_level, Real threshold=1) const override | core::scoring::constraints::AtomPairConstraint | virtual |
| steal_def(pose::Pose const &) | core::scoring::constraints::Constraint | virtual |
| to_string() const | core::scoring::constraints::Constraint | |
| type() const override | core::scoring::constraints::NamedAtomPairConstraint | inlinevirtual |
| type1_id_ | core::scoring::constraints::NamedAtomPairConstraint | private |
| type2_id_ | core::scoring::constraints::NamedAtomPairConstraint | private |
| unimplemented_method_error(std::string const &method_name) const | core::scoring::constraints::Constraint | private |
| ~Constraint() override | core::scoring::constraints::Constraint | |
