protocols::frag_picker::CSTalosIO Class Reference

#include <CSTalosIO.hh>

Public Member Functions
	CSTalosIO ()
	CSTalosIO (std::string file_name)
utility::vector1< utility::vector1< std::pair< core::Size, core::Real > > >	repack_to_matrix ()
core::Size	get_first_residue_id () const
core::Size	get_last_residue_id () const
std::string	get_sequence () const
bool	has_entry (core::Size residue_id)
void	get_tuples (core::Size, utility::vector1< boost::tuple< core::Size, char, std::string, core::Real > >)
void	get_tuples (core::Size, utility::vector1< boost::tuple< core::Size, char, std::string, core::Real > > &) const
utility::vector1< boost::tuple< core::Size, char, std::string, core::Real > >	get_entries ()
void	write (std::ostream &)
void	read (std::string const &)
core::Real	get_shift (core::Size, std::string const &) const
bool	has_atom (core::Size, std::string const &) const

Private Member Functions
void	print_sequence (std::string const &, std::ostream &) const
void	set_up_atom_order ()

Private Attributes
std::string	data_format_
std::string	sequence_
utility::vector1< std::string >	column_names_
core::Size	first_residue_index_
utility::vector1< boost::tuple< core::Size, char, std::string, core::Real > >	entries_
std::multimap< core::Size, core::Size >	resids_to_entries_map_
std::map< std::string, core::Size >	order_of_atoms_
utility::vector1< boost::tuple< core::Size, char, std::string, core::Real > >	used_for_searching_

Constructor & Destructor Documentation

CSTalosIO() [1/2]

protocols::frag_picker::CSTalosIO::CSTalosIO ( )

inline

References first_residue_index_, and set_up_atom_order().

CSTalosIO() [2/2]

protocols::frag_picker::CSTalosIO::CSTalosIO ( std::string  file_name )

inline

References first_residue_index_, read(), and set_up_atom_order().

Member Function Documentation

get_entries()

utility::vector1<boost::tuple<core::Size, char, std::string, core::Real> > protocols::frag_picker::CSTalosIO::get_entries ( )

inline

References entries_.

get_first_residue_id()

core::Size protocols::frag_picker::CSTalosIO::get_first_residue_id ( ) const

inline

References first_residue_index_.

get_last_residue_id()

core::Size protocols::frag_picker::CSTalosIO::get_last_residue_id ( ) const

inline

References first_residue_index_, and sequence_.

get_sequence()

std::string protocols::frag_picker::CSTalosIO::get_sequence ( ) const

inline

References sequence_.

Referenced by protocols::frag_picker::CS2ndShift::CS2ndShift().

get_shift()

core::Real protocols::frag_picker::CSTalosIO::get_shift	(	core::Size	residue_id,
		std::string const &	atom_name
	)		const

Referenced by protocols::frag_picker::CS2ndShift::CS2ndShift().

get_tuples() [1/2]

void protocols::frag_picker::CSTalosIO::get_tuples	(	core::Size	residue_id,
		utility::vector1< boost::tuple< core::Size, char, std::string, core::Real > > &	results
	)		const

get_tuples() [2/2]

void protocols::frag_picker::CSTalosIO::get_tuples	(	core::Size	residue_id,
		utility::vector1< boost::tuple< core::Size, char, std::string, core::Real > >	results
	)

has_atom()

bool protocols::frag_picker::CSTalosIO::has_atom	(	core::Size	residue_id,
		std::string const &	atom_name
	)		const

Referenced by protocols::frag_picker::CS2ndShift::CS2ndShift().

has_entry()

bool protocols::frag_picker::CSTalosIO::has_entry ( core::Size  residue_id )

inline

References resids_to_entries_map_.

print_sequence()

void protocols::frag_picker::CSTalosIO::print_sequence ( std::string const &  , std::ostream &    ) const

private

read()

void protocols::frag_picker::CSTalosIO::read

(

std::string const &

file_name

)

References protocols::cluster::calibur::aa, protocols::hybridization::t, and protocols::frag_picker::tr().

Referenced by CSTalosIO().

repack_to_matrix()

utility::vector1< utility::vector1< std::pair< core::Size, core::Real > > > protocols::frag_picker::CSTalosIO::repack_to_matrix

(

)

set_up_atom_order()

void protocols::frag_picker::CSTalosIO::set_up_atom_order ( )

private

Referenced by CSTalosIO().

write()

void protocols::frag_picker::CSTalosIO::write

(

std::ostream &

out

)

References core::conformation::membrane::out.

Referenced by protocols::frag_picker::scores::MakeAmbigCSScore::make().

Member Data Documentation

column_names_

utility::vector1<std::string> protocols::frag_picker::CSTalosIO::column_names_

private

data_format_

std::string protocols::frag_picker::CSTalosIO::data_format_

private

entries_

utility::vector1<boost::tuple<core::Size, char, std::string, core::Real> > protocols::frag_picker::CSTalosIO::entries_

private

Referenced by get_entries().

first_residue_index_

core::Size protocols::frag_picker::CSTalosIO::first_residue_index_

private

Referenced by CSTalosIO(), get_first_residue_id(), and get_last_residue_id().

order_of_atoms_

std::map<std::string, core::Size> protocols::frag_picker::CSTalosIO::order_of_atoms_

private

resids_to_entries_map_

std::multimap<core::Size, core::Size> protocols::frag_picker::CSTalosIO::resids_to_entries_map_

private

Referenced by has_entry().

sequence_

std::string protocols::frag_picker::CSTalosIO::sequence_

private

Referenced by get_last_residue_id(), and get_sequence().

used_for_searching_

utility::vector1<boost::tuple<core::Size, char, std::string, core::Real> > protocols::frag_picker::CSTalosIO::used_for_searching_

private

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The documentation for this class was generated from the following files:

• src/protocols/frag_picker/CSTalosIO.hh
• src/protocols/frag_picker/CSTalosIO.cc