Rosetta
protocols::design_opt::Supercharge Member List

This is the complete list of members for protocols::design_opt::Supercharge, including all inherited members.

apply(Pose &pose) overrideprotocols::design_opt::Superchargevirtual
AvNAPSA_negative(bool s)protocols::design_opt::Superchargeinline
AvNAPSA_negative_protocols::design_opt::Superchargeprivate
AvNAPSA_positive(bool s)protocols::design_opt::Superchargeinline
AvNAPSA_positive_protocols::design_opt::Superchargeprivate
AvNAPSA_values(Pose const &pose)protocols::design_opt::Superchargevirtual
AvNAPSA_values_protocols::design_opt::Superchargeprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() constprotocols::moves::Movervirtual
compare_residue_energies_all(bool s)protocols::design_opt::Superchargeinline
compare_residue_energies_all_protocols::design_opt::Superchargeprivate
compare_residue_energies_mut(bool s)protocols::design_opt::Superchargeinline
compare_residue_energies_mut_protocols::design_opt::Superchargeprivate
create()protocols::moves::Movervirtual
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
design_supercharge(Pose const &starting_pose, Pose &pose)protocols::design_opt::Supercharge
design_supercharge_AvNAPSA(Pose const &starting_pose, Pose &pose)protocols::design_opt::Superchargevirtual
dont_mutate_correct_charge(bool s)protocols::design_opt::Superchargeinline
dont_mutate_correct_charge_protocols::design_opt::Superchargeprivate
dont_mutate_glyprocys(bool s)protocols::design_opt::Superchargeinline
dont_mutate_glyprocys_protocols::design_opt::Superchargeprivate
dont_mutate_hbonded_sidechains(bool s)protocols::design_opt::Superchargeinline
dont_mutate_hbonded_sidechains_protocols::design_opt::Superchargeprivate
energy_comparison(Pose &native, Pose &pose)protocols::design_opt::Supercharge
fresh_instance() constprotocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_name() const overrideprotocols::design_opt::Superchargeinlinevirtual
get_native_pose() constprotocols::moves::Mover
get_net_charge(Pose const &pose)protocols::design_opt::Supercharge
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() constprotocols::moves::Moverinline
include_arg(bool s)protocols::design_opt::Superchargeinline
include_arg_protocols::design_opt::Superchargeprivate
include_asp(bool s)protocols::design_opt::Superchargeinline
include_asp_protocols::design_opt::Superchargeprivate
include_glu(bool s)protocols::design_opt::Superchargeinline
include_glu_protocols::design_opt::Superchargeprivate
include_lys(bool s)protocols::design_opt::Superchargeinline
include_lys_protocols::design_opt::Superchargeprivate
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
input_pose_protocols::moves::Moverprivate
largest_mutated_AvNAPSA_protocols::design_opt::Superchargeprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
local_nstruct(core::Size s)protocols::design_opt::Superchargeinline
local_nstruct_protocols::design_opt::Superchargeprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
native_pose_protocols::moves::Moverprivate
out_path_protocols::design_opt::Superchargeprivate
outputname_protocols::design_opt::Superchargeprivate
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
pre_packminpack(bool s)protocols::design_opt::Superchargeinline
pre_packminpack_protocols::design_opt::Superchargeprivate
prepack_input_structure(Pose &pose)protocols::design_opt::Superchargevirtual
print_netcharge_and_mutations(Pose const &starting_pose, Pose const &pose)protocols::design_opt::Supercharge
provide_citation_info(basic::citation_manager::CitationCollectionList &) constprotocols::moves::Movervirtual
refweight_arg(core::Real s)protocols::design_opt::Superchargeinline
refweight_arg_protocols::design_opt::Superchargeprivate
refweight_asp(core::Real s)protocols::design_opt::Superchargeinline
refweight_asp_protocols::design_opt::Superchargeprivate
refweight_glu(core::Real s)protocols::design_opt::Superchargeinline
refweight_glu_protocols::design_opt::Superchargeprivate
refweight_lys(core::Real s)protocols::design_opt::Superchargeinline
refweight_lys_protocols::design_opt::Superchargeprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
reset_status()protocols::moves::Mover
scorefxn_protocols::design_opt::Superchargeprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_reference_energies()protocols::design_opt::Supercharge
set_resfile(Pose const &pose)protocols::design_opt::Supercharge
set_resfile_AvNAPSA(Pose const &pose)protocols::design_opt::Superchargevirtual
set_surface(Pose const &pose)protocols::design_opt::Supercharge
set_type(std::string const &setting)protocols::moves::Moverinline
show(std::ostream &output=std::cout) constprotocols::moves::Movervirtual
SizeSet typedefprotocols::design_opt::Supercharge
Strings typedefprotocols::moves::Mover
Supercharge()=defaultprotocols::design_opt::Supercharge
surface_atom_cutoff(core::Size s)protocols::design_opt::Superchargeinline
surface_atom_cutoff_protocols::design_opt::Superchargeprivate
surface_atom_cutoff_set_protocols::design_opt::Superchargeprivate
surface_res_protocols::design_opt::Superchargeprivate
surface_residue_cutoff(core::Size s)protocols::design_opt::Superchargeinline
surface_residue_cutoff_protocols::design_opt::Superchargeprivate
TagCOP typedefprotocols::moves::Mover
target_net_charge(int s)protocols::design_opt::Superchargeinline
target_net_charge_protocols::design_opt::Superchargeprivate
target_net_charge_active(bool s)protocols::design_opt::Superchargeinline
target_net_charge_active_protocols::design_opt::Superchargeprivate
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
~Supercharge() override=defaultprotocols::design_opt::Supercharge