protocols::design_opt::Supercharge Member List

This is the complete list of members for protocols::design_opt::Supercharge, including all inherited members.

apply(Pose &pose) override	protocols::design_opt::Supercharge	virtual
AvNAPSA_negative(bool s)	protocols::design_opt::Supercharge	inline
AvNAPSA_negative_	protocols::design_opt::Supercharge	private
AvNAPSA_positive(bool s)	protocols::design_opt::Supercharge	inline
AvNAPSA_positive_	protocols::design_opt::Supercharge	private
AvNAPSA_values(Pose const &pose)	protocols::design_opt::Supercharge	virtual
AvNAPSA_values_	protocols::design_opt::Supercharge	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
compare_residue_energies_all(bool s)	protocols::design_opt::Supercharge	inline
compare_residue_energies_all_	protocols::design_opt::Supercharge	private
compare_residue_energies_mut(bool s)	protocols::design_opt::Supercharge	inline
compare_residue_energies_mut_	protocols::design_opt::Supercharge	private
create()	protocols::moves::Mover	virtual
current_job_	protocols::moves::Mover	private
current_tag_	protocols::moves::Mover	private
design_supercharge(Pose const &starting_pose, Pose &pose)	protocols::design_opt::Supercharge
design_supercharge_AvNAPSA(Pose const &starting_pose, Pose &pose)	protocols::design_opt::Supercharge	virtual
dont_mutate_correct_charge(bool s)	protocols::design_opt::Supercharge	inline
dont_mutate_correct_charge_	protocols::design_opt::Supercharge	private
dont_mutate_glyprocys(bool s)	protocols::design_opt::Supercharge	inline
dont_mutate_glyprocys_	protocols::design_opt::Supercharge	private
dont_mutate_hbonded_sidechains(bool s)	protocols::design_opt::Supercharge	inline
dont_mutate_hbonded_sidechains_	protocols::design_opt::Supercharge	private
energy_comparison(Pose &native, Pose &pose)	protocols::design_opt::Supercharge
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::design_opt::Supercharge	inlinevirtual
get_native_pose() const	protocols::moves::Mover
get_net_charge(Pose const &pose)	protocols::design_opt::Supercharge
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
include_arg(bool s)	protocols::design_opt::Supercharge	inline
include_arg_	protocols::design_opt::Supercharge	private
include_asp(bool s)	protocols::design_opt::Supercharge	inline
include_asp_	protocols::design_opt::Supercharge	private
include_glu(bool s)	protocols::design_opt::Supercharge	inline
include_glu_	protocols::design_opt::Supercharge	private
include_lys(bool s)	protocols::design_opt::Supercharge	inline
include_lys_	protocols::design_opt::Supercharge	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
info_	protocols::moves::Mover	private
input_pose_	protocols::moves::Mover	private
largest_mutated_AvNAPSA_	protocols::design_opt::Supercharge	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
last_status_	protocols::moves::Mover	private
local_nstruct(core::Size s)	protocols::design_opt::Supercharge	inline
local_nstruct_	protocols::design_opt::Supercharge	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
native_pose_	protocols::moves::Mover	private
out_path_	protocols::design_opt::Supercharge	private
outputname_	protocols::design_opt::Supercharge	private
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
pre_packminpack(bool s)	protocols::design_opt::Supercharge	inline
pre_packminpack_	protocols::design_opt::Supercharge	private
prepack_input_structure(Pose &pose)	protocols::design_opt::Supercharge	virtual
print_netcharge_and_mutations(Pose const &starting_pose, Pose const &pose)	protocols::design_opt::Supercharge
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
refweight_arg(core::Real s)	protocols::design_opt::Supercharge	inline
refweight_arg_	protocols::design_opt::Supercharge	private
refweight_asp(core::Real s)	protocols::design_opt::Supercharge	inline
refweight_asp_	protocols::design_opt::Supercharge	private
refweight_glu(core::Real s)	protocols::design_opt::Supercharge	inline
refweight_glu_	protocols::design_opt::Supercharge	private
refweight_lys(core::Real s)	protocols::design_opt::Supercharge	inline
refweight_lys_	protocols::design_opt::Supercharge	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
scorefxn_	protocols::design_opt::Supercharge	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_reference_energies()	protocols::design_opt::Supercharge
set_resfile(Pose const &pose)	protocols::design_opt::Supercharge
set_resfile_AvNAPSA(Pose const &pose)	protocols::design_opt::Supercharge	virtual
set_surface(Pose const &pose)	protocols::design_opt::Supercharge
set_type(std::string const &setting)	protocols::moves::Mover	inline
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
SizeSet typedef	protocols::design_opt::Supercharge
Strings typedef	protocols::moves::Mover
Supercharge()=default	protocols::design_opt::Supercharge
surface_atom_cutoff(core::Size s)	protocols::design_opt::Supercharge	inline
surface_atom_cutoff_	protocols::design_opt::Supercharge	private
surface_atom_cutoff_set_	protocols::design_opt::Supercharge	private
surface_res_	protocols::design_opt::Supercharge	private
surface_residue_cutoff(core::Size s)	protocols::design_opt::Supercharge	inline
surface_residue_cutoff_	protocols::design_opt::Supercharge	private
TagCOP typedef	protocols::moves::Mover
target_net_charge(int s)	protocols::design_opt::Supercharge	inline
target_net_charge_	protocols::design_opt::Supercharge	private
target_net_charge_active(bool s)	protocols::design_opt::Supercharge	inline
target_net_charge_active_	protocols::design_opt::Supercharge	private
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
type_	protocols::moves::Mover	private
~Supercharge() override=default	protocols::design_opt::Supercharge