core::scoring::aa_composition_energy Namespace Reference

Classes
class	AACompositionConstraint
class	AACompositionPropertiesSet
	AACompositionPropertiesSet, a helper class that stores: More...
class	AACompositionEnergySetup
	AACompositionEnergySetup, a helper class for the AACompositionEnergy energy method that stores all of its setup data. More...
class	SequenceConstraint

Typedefs
typedef utility::pointer::shared_ptr< AACompositionConstraint >	AACompositionConstraintOP
typedef utility::pointer::shared_ptr< AACompositionConstraint const >	AACompositionConstraintCOP
typedef utility::pointer::shared_ptr< AACompositionPropertiesSet >	AACompositionPropertiesSetOP
typedef utility::pointer::shared_ptr< AACompositionPropertiesSet const >	AACompositionPropertiesSetCOP
typedef utility::pointer::shared_ptr< AACompositionEnergySetup >	AACompositionEnergySetupOP
typedef utility::pointer::shared_ptr< AACompositionEnergySetup const >	AACompositionEnergySetupCOP
typedef utility::pointer::shared_ptr< SequenceConstraint >	SequenceConstraintOP
typedef utility::pointer::shared_ptr< SequenceConstraint const >	SequenceConstraintCOP

Enumerations
enum	TailFunction {   tf_linear = 1 , tf_quadratic , tf_constant , tf_unknown ,   tf_end_of_list =tf_unknown }
	The different types of behaviour for the penalty values past the defined range. More...

Functions
static basic::Tracer	TR ("core.scoring.aa_composition_energy.AACompositionConstraint")
static basic::Tracer	TR ("core.scoring.aa_composition_energy.AACompositionEnergySetup")
static basic::Tracer	TR ("core.scoring.aa_composition_energy.SequenceConstraint")

Typedef Documentation

AACompositionConstraintCOP

typedef utility::pointer::shared_ptr< AACompositionConstraint const > core::scoring::aa_composition_energy::AACompositionConstraintCOP

AACompositionConstraintOP

typedef utility::pointer::shared_ptr< AACompositionConstraint > core::scoring::aa_composition_energy::AACompositionConstraintOP

AACompositionEnergySetupCOP

typedef utility::pointer::shared_ptr< AACompositionEnergySetup const > core::scoring::aa_composition_energy::AACompositionEnergySetupCOP

AACompositionEnergySetupOP

typedef utility::pointer::shared_ptr< AACompositionEnergySetup > core::scoring::aa_composition_energy::AACompositionEnergySetupOP

AACompositionPropertiesSetCOP

typedef utility::pointer::shared_ptr< AACompositionPropertiesSet const > core::scoring::aa_composition_energy::AACompositionPropertiesSetCOP

AACompositionPropertiesSetOP

typedef utility::pointer::shared_ptr< AACompositionPropertiesSet > core::scoring::aa_composition_energy::AACompositionPropertiesSetOP

SequenceConstraintCOP

typedef utility::pointer::shared_ptr< SequenceConstraint const > core::scoring::aa_composition_energy::SequenceConstraintCOP

SequenceConstraintOP

typedef utility::pointer::shared_ptr< SequenceConstraint > core::scoring::aa_composition_energy::SequenceConstraintOP

Enumeration Type Documentation

TailFunction

enum core::scoring::aa_composition_energy::TailFunction

The different types of behaviour for the penalty values past the defined range.

When values are added to this enum, they should also be added to the AACompositionEnergySetup::get_tailfunction_name() function.

Enumerator
tf_linear
tf_quadratic
tf_constant
tf_unknown
tf_end_of_list

Function Documentation

TR() [1/3]

static basic::Tracer core::scoring::aa_composition_energy::TR ( "core.scoring.aa_composition_energy.AACompositionConstraint"  )

static

Referenced by core::scoring::aa_composition_energy::AACompositionEnergySetup::check_data(), core::scoring::aa_composition_energy::AACompositionEnergySetup::initialize_from_file(), and core::scoring::aa_composition_energy::AACompositionEnergySetup::initialize_from_file_contents().

TR() [2/3]

static basic::Tracer core::scoring::aa_composition_energy::TR ( "core.scoring.aa_composition_energy.AACompositionEnergySetup"  )

static

TR() [3/3]

static basic::Tracer core::scoring::aa_composition_energy::TR ( "core.scoring.aa_composition_energy.SequenceConstraint"  )

static