protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions Member List

This is the complete list of members for protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions, including all inherited members.

centroid_max_temperature() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
centroid_max_temperature_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
centroid_min_temperature() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
centroid_min_temperature_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
clean_fasta_file_contents()	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
clone() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
do_fullatom_refinement() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
do_fullatom_refinement_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
fasta_file() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
fasta_file_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
fasta_file_contents() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
fasta_file_contents_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
findchar(std::string const &curstring, utility::vector1< char > const &chars) const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
fullatom_fast_relax_rounds() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
fullatom_fast_relax_rounds_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
fullatom_find_disulfides() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
fullatom_find_disulfides_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
HelicalBundlePredictApplicationOptions()	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
helix_assignment_file() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
helix_assignment_file_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
helix_assignment_file_contents() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
helix_assignment_file_contents_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
initialize_from_options()	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
native_file() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
native_file_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
nstruct() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
nstruct_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
num_simulated_annealing_rounds_centroid() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
num_simulated_annealing_rounds_centroid_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
num_steps_per_simulated_annealing_round_centroid() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
num_steps_per_simulated_annealing_round_centroid_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
psipred_alpha_helix_prob_cutoff() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
psipred_alpha_helix_prob_cutoff_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
psipred_assignment_file() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
psipred_assignment_file_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
psipred_assignment_file_contents() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
psipred_assignment_file_contents_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
psipred_beta_strand_prob_cutoff() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
psipred_beta_strand_prob_cutoff_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
read_fasta()	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
read_helix_assignments()	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
read_inputs()	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
read_psipred_file()	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
read_sequence_file()	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
register_options()	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	static
rmsd_residues_to_ignore_native() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
rmsd_residues_to_ignore_native_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
rmsd_residues_to_ignore_prediction() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
rmsd_residues_to_ignore_prediction_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
sequence_file_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
sequence_file_contents() const	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	inline
sequence_file_contents_	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions	private
set_fasta_file(std::string const &file_in)	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_fasta_file_contents(std::string const &contents_in)	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_helix_assignment_file(std::string const &file_in)	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_helix_assignment_file_contents(std::string const &contents_in)	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_psipred_assignment_file_contents(std::string const &contents_in)	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_psipred_file(std::string const &psipred_file_in)	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_rmsd_residues_to_ignore_native(utility::vector1< signed long > const &input)	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_rmsd_residues_to_ignore_prediction(utility::vector1< signed long > const &input)	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_sequence_file(std::string const &file_in)	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
set_sequence_file_contents(std::string const &contents_in)	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
~HelicalBundlePredictApplicationOptions() override	protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions