protocols::sewing::scoring::InterModelMotifScorer Class Reference

#include <InterModelMotifScorer.hh>

Inheritance diagram for protocols::sewing::scoring::InterModelMotifScorer:

Public Member Functions
	InterModelMotifScorer ()
	default construct More...
	~InterModelMotifScorer () override=default
	InterModelMotifScorer (InterModelMotifScorer const &)
core::Real	score (data_storage::SmartAssemblyCOP assembly) override
core::Real	full_motif_score (data_storage::SmartAssemblyCOP assembly)
std::string	get_name () const override
core::Real	get_weight () const override
void	set_weight (core::Real) override
void	set_options_from_tag (utility::tag::TagCOP scorer_tag, basic::datacache::DataMap &datamap) override
Public Member Functions inherited from protocols::sewing::scoring::MotifScorer
	MotifScorer ()
	default construct More...
	~MotifScorer () override=default
	MotifScorer (MotifScorer const &)
core::Real	score (data_storage::SmartAssemblyCOP assembly) override
core::Real	norm_motif_score (data_storage::SmartAssemblyCOP assembly)
core::Real	full_motif_score (data_storage::SmartAssemblyCOP assembly)
numeric::xyzTransform< core::Real >	get_stub (data_storage::SmartSewingResidueCOP residue) const
core::Real	get_score (numeric::xyzTransform< core::Real > stub1, char ss1, char aa1, numeric::xyzTransform< core::Real > stub2, char ss2, char aa2) const
std::string	get_name () const override
core::Real	get_weight () const override
void	set_weight (core::Real) override
void	set_options_from_tag (utility::tag::TagCOP scorer_tag, basic::datacache::DataMap &datamap) override
core::Real	get_last_score () const override
void	set_last_score (core::Real score) override
core::Real	get_old_last_score () const override
void	set_old_last_score (core::Real score) override
Public Member Functions inherited from protocols::sewing::scoring::AssemblyScorer
virtual	~AssemblyScorer ()=default
	Destructor. More...
	AssemblyScorer ()=default
	Prevent direct instantiation: No other constructors allowed. More...
	AssemblyScorer (AssemblyScorer const &)=default

Static Public Member Functions
static std::string	type_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &)
Static Public Member Functions inherited from protocols::sewing::scoring::MotifScorer
static std::string	type_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &)

Private Attributes
core::Real	weight_ =10.0

Additional Inherited Members
Protected Attributes inherited from protocols::sewing::scoring::MotifScorer
core::scoring::motif::MotifHashManager &	mman_
core::chemical::ResidueTypeSetCOP	res_type_set_
core::Real	last_score_ =1000
core::Real	old_last_score_ =1000

Constructor & Destructor Documentation

InterModelMotifScorer() [1/2]

protocols::sewing::scoring::InterModelMotifScorer::InterModelMotifScorer

(

)

default construct

~InterModelMotifScorer()

protocols::sewing::scoring::InterModelMotifScorer::~InterModelMotifScorer ( )

overridedefault

InterModelMotifScorer() [2/2]

protocols::sewing::scoring::InterModelMotifScorer::InterModelMotifScorer

(

InterModelMotifScorer const &

src

)

Member Function Documentation

full_motif_score()

core::Real protocols::sewing::scoring::InterModelMotifScorer::full_motif_score

(

data_storage::SmartAssemblyCOP

assembly

)

use Will's Motif score to calculate the motif score for interactions between a given segment and segments from other models. Divide by total number of segments

References protocols::sewing::data_storage::SmartSegment::get_n_most_segment(), protocols::sewing::scoring::MotifScorer::get_score(), protocols::sewing::scoring::MotifScorer::get_stub(), protocols::sewing::scoring::MotifScorer::res_type_set_, score(), and protocols::sewing::scoring::TR().

Referenced by score().

get_name()

std::string protocols::sewing::scoring::InterModelMotifScorer::get_name ( ) const

overridevirtual

Implements protocols::sewing::scoring::AssemblyScorer.

get_weight()

core::Real protocols::sewing::scoring::InterModelMotifScorer::get_weight ( ) const

overridevirtual

Implements protocols::sewing::scoring::AssemblyScorer.

References weight_.

provide_xml_schema()

void protocols::sewing::scoring::InterModelMotifScorer::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References protocols::sewing::scoring::AssemblyScorerFactory::assembly_scorer_ct_namer(), and type_name().

Referenced by protocols::sewing::scoring::InterModelMotifScorerCreator::provide_xml_schema().

score()

core::Real protocols::sewing::scoring::InterModelMotifScorer::score ( data_storage::SmartAssemblyCOP  assembly )

overridevirtual

Use the negative normalized motif score

Implements protocols::sewing::scoring::AssemblyScorer.

References full_motif_score(), protocols::sewing::scoring::MotifScorer::get_last_score(), protocols::sewing::scoring::MotifScorer::set_last_score(), protocols::sewing::scoring::MotifScorer::set_old_last_score(), and protocols::sewing::scoring::TR().

Referenced by full_motif_score().

set_options_from_tag()

void protocols::sewing::scoring::InterModelMotifScorer::set_options_from_tag ( utility::tag::TagCOP  scorer_tag, basic::datacache::DataMap &  datamap  )

overridevirtual

Implements protocols::sewing::scoring::AssemblyScorer.

References protocols::sewing::scoring::TR(), and weight_.

set_weight()

void protocols::sewing::scoring::InterModelMotifScorer::set_weight ( core::Real  weight )

overridevirtual

Implements protocols::sewing::scoring::AssemblyScorer.

References weight_.

type_name()

std::string protocols::sewing::scoring::InterModelMotifScorer::type_name ( )

static

Referenced by protocols::sewing::scoring::InterModelMotifScorerCreator::keyname(), and provide_xml_schema().

Member Data Documentation

weight_

core::Real protocols::sewing::scoring::InterModelMotifScorer::weight_ =10.0

private

Referenced by get_weight(), set_options_from_tag(), and set_weight().

---

The documentation for this class was generated from the following files:

• src/protocols/sewing/scoring/InterModelMotifScorer.hh
• src/protocols/sewing/scoring/InterModelMotifScorer.cc