core::pose::rna::RNA_DataInfo Class Reference

Keep track of RNA chemical mapping data inside the pose. More...

#include <RNA_DataInfo.hh>

Inheritance diagram for core::pose::rna::RNA_DataInfo:

Public Member Functions
	RNA_DataInfo ()
	RNA_DataInfo (RNA_DataInfo const &src)
	~RNA_DataInfo () override
RNA_DataInfoOP	clone () const
RNA_DataInfo &	operator= (RNA_DataInfo const &src)
Size	size () const
void	zero ()
RNA_Data const &	rna_data () const
void	add_datum (RNA_Datum const &rna_datum)
RNA_Reactivities const &	rna_reactivities () const
void	add_reactivity (RNA_Reactivity const &rna_reactivity)
ObjexxFCL::FArray1D< bool > const &	backbone_burial () const
void	set_backbone_burial (ObjexxFCL::FArray1D< bool > const &backbone_burial)
ObjexxFCL::FArray1D< bool > const &	backbone_exposed () const
void	set_backbone_exposed (ObjexxFCL::FArray1D< bool > const &backbone_exposed)

Private Attributes
RNA_Data	rna_data_
ObjexxFCL::FArray1D< bool >	backbone_burial_
ObjexxFCL::FArray1D< bool >	backbone_exposed_
RNA_Reactivities	rna_reactivities_

Detailed Description

Keep track of RNA chemical mapping data inside the pose.

Constructor & Destructor Documentation

RNA_DataInfo() [1/2]

core::pose::rna::RNA_DataInfo::RNA_DataInfo ( )

inline

RNA_DataInfo() [2/2]

core::pose::rna::RNA_DataInfo::RNA_DataInfo

(

RNA_DataInfo const &

src

)

Copy constructors must copy all data, not just some...

~RNA_DataInfo()

core::pose::rna::RNA_DataInfo::~RNA_DataInfo ( )

inlineoverride

Member Function Documentation

add_datum()

void core::pose::rna::RNA_DataInfo::add_datum ( RNA_Datum const &  rna_datum )

inline

References rna_data_.

add_reactivity()

void core::pose::rna::RNA_DataInfo::add_reactivity ( RNA_Reactivity const &  rna_reactivity )

inline

References rna_reactivities_.

backbone_burial()

ObjexxFCL::FArray1D< bool > const& core::pose::rna::RNA_DataInfo::backbone_burial ( ) const

inline

References backbone_burial_.

Referenced by core::energy_methods::RNA_DataBackboneEnergy::eval_atom_derivative(), core::energy_methods::RNA_DataBackboneEnergy::residue_pair_energy(), and set_backbone_burial().

backbone_exposed()

ObjexxFCL::FArray1D< bool > const& core::pose::rna::RNA_DataInfo::backbone_exposed ( ) const

inline

References backbone_exposed_.

Referenced by core::energy_methods::RNA_DataBackboneEnergy::eval_atom_derivative(), core::energy_methods::RNA_DataBackboneEnergy::residue_pair_energy(), and set_backbone_exposed().

clone()

RNA_DataInfoOP core::pose::rna::RNA_DataInfo::clone ( ) const

inline

operator=()

RNA_DataInfo & core::pose::rna::RNA_DataInfo::operator=

(

RNA_DataInfo const &

src

)

References backbone_burial_, backbone_exposed_, rna_data_, and rna_reactivities_.

rna_data()

RNA_Data const& core::pose::rna::RNA_DataInfo::rna_data ( ) const

inline

References rna_data_.

Referenced by core::pose::rna::RNA_FilteredBaseBaseInfo::get_data_score().

rna_reactivities()

RNA_Reactivities const& core::pose::rna::RNA_DataInfo::rna_reactivities ( ) const

inline

References rna_reactivities_.

Referenced by core::energy_methods::RNA_ChemicalMappingEnergy::calculate_energy().

set_backbone_burial()

void core::pose::rna::RNA_DataInfo::set_backbone_burial ( ObjexxFCL::FArray1D< bool > const &  backbone_burial )

inline

References backbone_burial(), and backbone_burial_.

set_backbone_exposed()

void core::pose::rna::RNA_DataInfo::set_backbone_exposed ( ObjexxFCL::FArray1D< bool > const &  backbone_exposed )

inline

References backbone_exposed(), and backbone_exposed_.

size()

Size core::pose::rna::RNA_DataInfo::size ( ) const

inline

References rna_data_.

zero()

void core::pose::rna::RNA_DataInfo::zero

(

)

References rna_data_, and rna_reactivities_.

Member Data Documentation

backbone_burial_

ObjexxFCL::FArray1D< bool > core::pose::rna::RNA_DataInfo::backbone_burial_

private

Referenced by backbone_burial(), operator=(), and set_backbone_burial().

backbone_exposed_

ObjexxFCL::FArray1D< bool > core::pose::rna::RNA_DataInfo::backbone_exposed_

private

Referenced by backbone_exposed(), operator=(), and set_backbone_exposed().

rna_data_

RNA_Data core::pose::rna::RNA_DataInfo::rna_data_

private

Referenced by add_datum(), operator=(), rna_data(), size(), and zero().

rna_reactivities_

RNA_Reactivities core::pose::rna::RNA_DataInfo::rna_reactivities_

private

Referenced by add_reactivity(), operator=(), rna_reactivities(), and zero().

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The documentation for this class was generated from the following files:

• src/core/pose/rna/RNA_DataInfo.hh
• src/core/pose/rna/RNA_DataInfo.cc