The JumpDownstreamSelector returns a ResidueSubset, i.e. a utility::vector1< bool > containing 'true' for residue positions which lie downstream of a given jump in the FoldTree. The jump is specified by an integer index. More...
#include <JumpDownstreamSelector.hh>
Public Member Functions | |
| JumpDownstreamSelector () | |
| JumpDownstreamSelector (JumpDownstreamSelector const &src) | |
| Copy constructor. More... | |
| ResidueSelectorOP | clone () const override |
| Clone operator. More... | |
| JumpDownstreamSelector (int jump) | |
| JumpDownstreamSelector (core::select::jump_selector::JumpSelectorCOP sele) | |
| ~JumpDownstreamSelector () override | |
| ResidueSubset | apply (core::pose::Pose const &pose) const override |
| Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not. More... | |
| void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override |
| Initialize any data members of this instance from an input tag and a DataMap object. More... | |
| std::string | get_name () const override |
| void | set_jump (int jump) |
| sets the string by which residues are selected More... | |
| void | set_jump_selector (core::select::jump_selector::JumpSelectorCOP sele) |
| this overrides the integer setting if this is not null More... | |
 Public Member Functions inherited from core::select::residue_selector::ResidueSelector | |
| ResidueSelector () | |
| Constructor. More... | |
| ~ResidueSelector () override | |
| Destructor. More... | |
| utility::vector1< core::Size > | selection_positions (core::pose::Pose const &pose) const |
| Calls apply and returns the Rosetta numbering corresponding to the selected residues. More... | |
| virtual void | provide_citation_info (basic::citation_manager::CitationCollectionList &) const |
| Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More... | |
Static Public Member Functions | |
| static std::string | class_name () |
| static void | provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd) |
Private Attributes | |
| int | jump_ = 0 |
| core::select::jump_selector::JumpSelectorCOP | jump_selector_ = nullptr |
Detailed Description
The JumpDownstreamSelector returns a ResidueSubset, i.e. a utility::vector1< bool > containing 'true' for residue positions which lie downstream of a given jump in the FoldTree. The jump is specified by an integer index.
Constructor & Destructor Documentation
◆ JumpDownstreamSelector() [1/4]
|
default |
◆ JumpDownstreamSelector() [2/4]
|
default |
Copy constructor.
◆ JumpDownstreamSelector() [3/4]
| core::select::residue_selector::JumpDownstreamSelector::JumpDownstreamSelector | ( | int | jump | ) |
References jump_.
◆ JumpDownstreamSelector() [4/4]
| core::select::residue_selector::JumpDownstreamSelector::JumpDownstreamSelector | ( | core::select::jump_selector::JumpSelectorCOP | sele | ) |
◆ ~JumpDownstreamSelector()
|
overridedefault |
Member Function Documentation
◆ apply()
|
overridevirtual |
Return a ResidueSubset indicating a selection of Residues from the input Pose; the ResidueSubset is an array of booleans where a value of "true" for position i indicates that residue i is a part of the selected subset – and a value of "false" would indicate that it is not.
Implements core::select::residue_selector::ResidueSelector.
References core::pose::Pose::fold_tree(), jump_, core::kinematics::FoldTree::jump_edge(), jump_selector_, core::kinematics::FoldTree::partition_by_jump(), core::pose::Pose::size(), core::kinematics::Edge::stop(), and core::id::to_string().
Referenced by protocols::docking::EnsureExclusivelySharedJumpMover::apply(), and core::select::jump_selector::ExclusivelySharedJumpSelector::apply().
◆ class_name()
|
static |
◆ clone()
|
overridevirtual |
Clone operator.
Copy this object and return an owning pointer to the new object.
Implements core::select::residue_selector::ResidueSelector.
◆ get_name()
|
overridevirtual |
Implements core::select::residue_selector::ResidueSelector.
References class_name().
◆ parse_my_tag()
|
overridevirtual |
Initialize any data members of this instance from an input tag and a DataMap object.
Noop implementation in the base class in the case that a derived class has no need to read data from an input tag
Reimplemented from core::select::residue_selector::ResidueSelector.
References core::select::jump_selector::get_jump_selector(), set_jump(), and set_jump_selector().
◆ provide_xml_schema()
|
static |
◆ set_jump()
| void core::select::residue_selector::JumpDownstreamSelector::set_jump | ( | int | jump | ) |
◆ set_jump_selector()
|
inline |
this overrides the integer setting if this is not null
References jump_selector_.
Referenced by parse_my_tag().
Member Data Documentation
◆ jump_
|
private |
Referenced by apply(), JumpDownstreamSelector(), and set_jump().
◆ jump_selector_
|
private |
Referenced by apply(), and set_jump_selector().
The documentation for this class was generated from the following files:
- src/core/select/residue_selector/JumpDownstreamSelector.hh
- src/core/select/residue_selector/JumpDownstreamSelector.cc
