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core::sequence::CompositeScoringScheme Member List

This is the complete list of members for core::sequence::CompositeScoringScheme, including all inherited members.

add_scoring_scheme(ScoringSchemeOP scheme)core::sequence::CompositeScoringScheme
clone() const overridecore::sequence::CompositeScoringSchemeinlinevirtual
CompositeScoringScheme()core::sequence::CompositeScoringSchemeinline
CompositeScoringScheme(Real gap_open_in, Real gap_extend_in, utility::vector1< ScoringSchemeOP > schemes)core::sequence::CompositeScoringSchemeinline
count() constcore::sequence::CompositeScoringSchemeinline
gap_extend() constcore::sequence::ScoringSchemevirtual
gap_extend(Real const gap_extend)core::sequence::ScoringScheme
gap_extend_core::sequence::ScoringSchemeprivate
gap_open() constcore::sequence::ScoringSchemevirtual
gap_open(Real const gap_open)core::sequence::ScoringScheme
gap_open_core::sequence::ScoringSchemeprivate
is_good(Real const &num)core::sequence::ScoringScheme
read_data(utility::io::izstream &)core::sequence::ScoringSchemevirtual
read_from_file(utility::file::FileName const &fn) overridecore::sequence::CompositeScoringSchemevirtual
score(SequenceOP seq1, SequenceOP seq2, core::Size pos1, core::Size pos2) overridecore::sequence::CompositeScoringScheme
core::sequence::ScoringScheme::score(SequenceOP seq1, SequenceOP seq2, Size pos1, Size pos2)=0core::sequence::ScoringSchemepure virtual
scoring_schemes() constcore::sequence::CompositeScoringSchemeinline
scoring_schemes_core::sequence::CompositeScoringSchemeprivate
ScoringScheme()core::sequence::ScoringScheme
type() constcore::sequence::ScoringScheme
type(std::string new_type)core::sequence::ScoringScheme
type_core::sequence::ScoringSchemeprivate
unimplemented_method_error(std::string const &method_name) constcore::sequence::ScoringScheme
~CompositeScoringScheme() override=defaultcore::sequence::CompositeScoringScheme
~ScoringScheme() overridecore::sequence::ScoringScheme
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