protocols::frag_picker::PhiPsiTalosIO Class Reference

#include <PhiPsiTalosIO.hh>

Public Member Functions
	PhiPsiTalosIO ()
	PhiPsiTalosIO (std::string file_name)
core::Size	get_first_residue_id () const
core::Size	get_last_residue_id () const
std::string const &	get_sequence () const
bool	has_entry (core::Size residue_id) const
const boost::tuple< core::Size, char, core::Real, core::Real, core::Real, core::Real, core::Real, core::Real, core::Size, std::string >	get_entry (const core::Size res_id)
core::Real	phi (core::Size res_id)
core::Real	psi (core::Size res_id)
core::Real	d_phi (core::Size res_id)
core::Real	d_psi (core::Size res_id)
core::Real	dist (core::Size res_id)
core::Real	s2 (core::Size res_id)
std::string	quality (core::Size res_id)
void	write (std::ostream &)
void	read (std::string const &)

Private Member Functions
void	print_sequence (std::string const &, std::ostream &) const

Private Attributes
std::string	data_format_
std::string	sequence_
utility::vector1< std::string >	column_names_
core::Size	first_residue_index_
core::Size	last_residue_index_
std::map< core::Size, boost::tuple< core::Size, char, core::Real, core::Real, core::Real, core::Real, core::Real, core::Real, core::Size, std::string > >	entries_

Constructor & Destructor Documentation

PhiPsiTalosIO() [1/2]

protocols::frag_picker::PhiPsiTalosIO::PhiPsiTalosIO ( )

inline

References first_residue_index_.

PhiPsiTalosIO() [2/2]

protocols::frag_picker::PhiPsiTalosIO::PhiPsiTalosIO ( std::string  file_name )

inline

References first_residue_index_, and read().

Member Function Documentation

d_phi()

core::Real protocols::frag_picker::PhiPsiTalosIO::d_phi ( core::Size  res_id )

inline

References entries_.

Referenced by protocols::frag_picker::scores::PhiPsiSquareWell::PhiPsiSquareWell(), and read().

d_psi()

core::Real protocols::frag_picker::PhiPsiTalosIO::d_psi ( core::Size  res_id )

inline

References entries_.

Referenced by protocols::frag_picker::scores::PhiPsiSquareWell::PhiPsiSquareWell(), and read().

dist()

core::Real protocols::frag_picker::PhiPsiTalosIO::dist ( core::Size  res_id )

inline

References entries_.

Referenced by read().

get_entry()

const boost::tuple<core::Size, char, core::Real, core::Real, core::Real, core::Real, core::Real, core::Real, core::Size, std::string> protocols::frag_picker::PhiPsiTalosIO::get_entry ( const core::Size  res_id )

inline

References entries_.

Referenced by protocols::frag_picker::scores::PhiPsiRmsd::PhiPsiRmsd().

get_first_residue_id()

core::Size protocols::frag_picker::PhiPsiTalosIO::get_first_residue_id ( ) const

inline

References first_residue_index_.

get_last_residue_id()

core::Size protocols::frag_picker::PhiPsiTalosIO::get_last_residue_id ( ) const

inline

References first_residue_index_, and sequence_.

get_sequence()

std::string const& protocols::frag_picker::PhiPsiTalosIO::get_sequence ( ) const

inline

References sequence_.

Referenced by protocols::frag_picker::scores::PhiPsiRmsd::PhiPsiRmsd(), and protocols::frag_picker::scores::PhiPsiSquareWell::PhiPsiSquareWell().

has_entry()

bool protocols::frag_picker::PhiPsiTalosIO::has_entry ( core::Size  residue_id ) const

inline

References entries_.

Referenced by protocols::frag_picker::scores::PhiPsiRmsd::PhiPsiRmsd(), protocols::frag_picker::scores::PhiPsiSquareWell::PhiPsiSquareWell(), and read().

phi()

core::Real protocols::frag_picker::PhiPsiTalosIO::phi ( core::Size  res_id )

inline

References entries_.

Referenced by protocols::frag_picker::scores::PhiPsiSquareWell::PhiPsiSquareWell(), and read().

print_sequence()

void protocols::frag_picker::PhiPsiTalosIO::print_sequence ( std::string const &  , std::ostream &    ) const

private

psi()

core::Real protocols::frag_picker::PhiPsiTalosIO::psi ( core::Size  res_id )

inline

References entries_.

Referenced by protocols::frag_picker::scores::PhiPsiSquareWell::PhiPsiSquareWell(), and read().

quality()

std::string protocols::frag_picker::PhiPsiTalosIO::quality ( core::Size  res_id )

inline

References entries_.

Referenced by protocols::frag_picker::scores::PhiPsiSquareWell::PhiPsiSquareWell().

read()

void protocols::frag_picker::PhiPsiTalosIO::read

(

std::string const &

file_name

)

References protocols::cluster::calibur::aa, d_phi(), d_psi(), data_format_, dist(), entries_, first_residue_index_, has_entry(), last_residue_index_, phi(), psi(), s2(), sequence_, protocols::hybridization::t, and protocols::frag_picker::tr().

Referenced by PhiPsiTalosIO().

s2()

core::Real protocols::frag_picker::PhiPsiTalosIO::s2 ( core::Size  res_id )

inline

References entries_.

Referenced by read().

write()

void protocols::frag_picker::PhiPsiTalosIO::write

(

std::ostream &

out

)

References column_names_, data_format_, entries_, first_residue_index_, core::conformation::membrane::out, and sequence_.

Member Data Documentation

column_names_

utility::vector1<std::string> protocols::frag_picker::PhiPsiTalosIO::column_names_

private

Referenced by write().

data_format_

std::string protocols::frag_picker::PhiPsiTalosIO::data_format_

private

Referenced by read(), and write().

entries_

std::map<core::Size, boost::tuple<core::Size, char, core::Real, core::Real, core::Real, core::Real, core::Real, core::Real, core::Size, std::string> > protocols::frag_picker::PhiPsiTalosIO::entries_

private

Referenced by d_phi(), d_psi(), dist(), get_entry(), has_entry(), phi(), psi(), quality(), read(), s2(), and write().

first_residue_index_

core::Size protocols::frag_picker::PhiPsiTalosIO::first_residue_index_

private

Referenced by get_first_residue_id(), get_last_residue_id(), PhiPsiTalosIO(), read(), and write().

last_residue_index_

core::Size protocols::frag_picker::PhiPsiTalosIO::last_residue_index_

private

Referenced by read().

sequence_

std::string protocols::frag_picker::PhiPsiTalosIO::sequence_

private

Referenced by get_last_residue_id(), get_sequence(), read(), and write().

---

The documentation for this class was generated from the following files:

• src/protocols/frag_picker/PhiPsiTalosIO.hh
• src/protocols/frag_picker/PhiPsiTalosIO.cc