protocols::stepwise::screener::SugarInstantiator Class Reference

#include <SugarInstantiator.hh>

Inheritance diagram for protocols::stepwise::screener::SugarInstantiator:

Public Member Functions
	SugarInstantiator (core::pose::Pose &screening_pose, core::Size const moving_res, core::Distance const o2prime_instantiation_distance_cutoff=6.0)
	~SugarInstantiator () override
bool	check_screen () override
std::string	name () const override
StepWiseScreenerType	type () const override
void	add_mover (moves::CompositionMoverOP update_mover, moves::CompositionMoverOP restore_mover) override
Public Member Functions inherited from protocols::stepwise::screener::SampleApplier
	SampleApplier ()
	SampleApplier (core::pose::Pose &pose, bool const apply_residue_alternative_sampler=true)
	~SampleApplier () override
void	get_update (sampler::StepWiseSamplerOP sampler) override
void	apply_mover (moves::CompositionMoverOP mover, core::Size const i, core::Size const j) override
core::pose::Pose &	pose ()
void	set_apply_residue_alternative_sampler_ (bool const setting)
Public Member Functions inherited from protocols::stepwise::screener::StepWiseScreener
	StepWiseScreener ()
	~StepWiseScreener () override
virtual void	fast_forward (sampler::StepWiseSamplerOP)
core::Size const &	count () const
void	increment_count ()
void	reset ()
void	set_ok_to_increment (bool const setting)

Private Member Functions
bool	check_moving_sugar (core::pose::Pose &pose, core::Size const moving_res)

Private Attributes
core::pose::Pose &	screening_pose_
core::Size const	moving_res_
core::Distance const	o2prime_instantiation_distance_cutoff_
bool	instantiate_sugar_

Additional Inherited Members
Protected Attributes inherited from protocols::stepwise::screener::SampleApplier
core::pose::Pose &	pose_
core::conformation::ResidueOP	moving_rsd_at_origin
utility::vector1< core::conformation::ResidueOP >	moving_rsd_at_origin_list
bool	apply_residue_alternative_sampler_

Constructor & Destructor Documentation

SugarInstantiator()

protocols::stepwise::screener::SugarInstantiator::SugarInstantiator	(	core::pose::Pose &	screening_pose,
		core::Size const	moving_res,
		core::Distance const	o2prime_instantiation_distance_cutoff = 6.0
	)

~SugarInstantiator()

protocols::stepwise::screener::SugarInstantiator::~SugarInstantiator ( )

overridedefault

Member Function Documentation

add_mover()

void protocols::stepwise::screener::SugarInstantiator::add_mover ( moves::CompositionMoverOP  update_mover, moves::CompositionMoverOP  restore_mover  )

overridevirtual

Reimplemented from protocols::stepwise::screener::StepWiseScreener.

References instantiate_sugar_, and moving_res_.

check_moving_sugar()

bool protocols::stepwise::screener::SugarInstantiator::check_moving_sugar ( core::pose::Pose &  pose, core::Size const  moving_res  )

private

References core::pose::rna::detect_sugar_contacts(), core::conformation::Residue::has_variant_type(), moving_res_, o2prime_instantiation_distance_cutoff_, protocols::stepwise::screener::SampleApplier::pose(), core::pose::Pose::residue(), and core::chemical::VIRTUAL_RIBOSE.

Referenced by check_screen().

check_screen()

bool protocols::stepwise::screener::SugarInstantiator::check_screen ( )

overridevirtual

Reimplemented from protocols::stepwise::screener::SampleApplier.

References check_moving_sugar(), instantiate_sugar_, moving_res_, and screening_pose_.

name()

std::string protocols::stepwise::screener::SugarInstantiator::name ( ) const

inlineoverridevirtual

Reimplemented from protocols::stepwise::screener::SampleApplier.

type()

StepWiseScreenerType protocols::stepwise::screener::SugarInstantiator::type ( ) const

inlineoverridevirtual

Reimplemented from protocols::stepwise::screener::SampleApplier.

References protocols::stepwise::screener::SUGAR_INSTANTIATOR.

Member Data Documentation

instantiate_sugar_

bool protocols::stepwise::screener::SugarInstantiator::instantiate_sugar_

private

Referenced by add_mover(), and check_screen().

moving_res_

core::Size const protocols::stepwise::screener::SugarInstantiator::moving_res_

private

Referenced by add_mover(), check_moving_sugar(), and check_screen().

o2prime_instantiation_distance_cutoff_

core::Distance const protocols::stepwise::screener::SugarInstantiator::o2prime_instantiation_distance_cutoff_

private

Referenced by check_moving_sugar().

screening_pose_

core::pose::Pose& protocols::stepwise::screener::SugarInstantiator::screening_pose_

private

Referenced by check_screen().

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The documentation for this class was generated from the following files:

• src/protocols/stepwise/screener/SugarInstantiator.hh
• src/protocols/stepwise/screener/SugarInstantiator.cc