#include <SSManager.hh>

Inheritance diagram for core::sequence::SSManager:

Public Types
typedef core::Size	Size

typedef std::string	String

Public Member Functions
	SSManager ()
	default constructor More...

	~SSManager () override
	value constructor More...

char	index2symbol (Size const &idx)
	transform abego index to symbol More...

Size	symbol2index (char const &symbol)
	transform abego symbol to index More...

Size	symbolString2index (std::string symbolString)
	transform abego symbol string to base5 index More...

std::string	index2symbolString (Size base5index, Size length)
	transform abego string to abego base5 index More...

Detailed Description

struct

manager for abego

Member Typedef Documentation

◆ Size

typedef core::Size core::sequence::SSManager::Size

◆ String

typedef std::string core::sequence::SSManager::String

Constructor & Destructor Documentation

◆ SSManager()

core::sequence::SSManager::SSManager ( )

default constructor

◆ ~SSManager()

core::sequence::SSManager::~SSManager ( )

overridedefault

value constructor

Member Function Documentation

◆ index2symbol()

char core::sequence::SSManager::index2symbol ( Size const & idx )

transform abego index to symbol

transform ss index to symbol

References TR().

Referenced by index2symbolString().

◆ index2symbolString()

std::string core::sequence::SSManager::index2symbolString	(	Size	base5index,
		Size	length
	)

transform abego string to abego base5 index

transform abego symbol string to base5 index. This is used to quickly pool the abego from Alex's hd5 database

References index2symbol().

Referenced by protocols::pose_length_moves::PossibleLoop::generate_output_pose(), and protocols::indexed_structure_store::SSHashedFragmentStore::init_SS_stub_HashedFragmentStore().

◆ symbol2index()

Size core::sequence::SSManager::symbol2index ( char const & symbol )

transform abego symbol to index

References TR().

Referenced by symbolString2index().

◆ symbolString2index()

Size core::sequence::SSManager::symbolString2index ( std::string symbolString )

transform abego symbol string to base5 index