| a_ids_ | protocols::scoring::methods::saxs::PDDFEnergy | mutableprivate |
| atomic_interaction_cutoff() const | core::scoring::methods::WholeStructureEnergy | inlinevirtual |
| atomistic_energy(core::Size atmno, conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) const | core::scoring::methods::EnergyMethod | virtual |
| atomistic_pair_energy(core::Size atmno1, conformation::Residue const &rsd1, core::Size atomno2, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) const | core::scoring::methods::EnergyMethod | virtual |
| bin_size_ | protocols::scoring::methods::saxs::PDDFEnergy | private |
| clone() const override | protocols::scoring::methods::saxs::PDDFEnergy | inlinevirtual |
| compute_chi(utility::vector1< core::Real > const &, utility::vector1< core::Real > const &) const | protocols::scoring::methods::saxs::PDDFEnergy | |
| compute_L1(utility::vector1< core::Real > const &, utility::vector1< core::Real > const &) const | protocols::scoring::methods::saxs::PDDFEnergy | |
| compute_pddf(const core::pose::Pose &) const | protocols::scoring::methods::saxs::PDDFEnergy | |
| compute_pddf_without_ff(const core::pose::Pose &) const | protocols::scoring::methods::saxs::PDDFEnergy | |
| create_energy_method(core::scoring::methods::EnergyMethodOptions const &) const | protocols::scoring::methods::saxs::PDDFEnergy | inline |
| create_pddf(core::pose::Pose &, core::Real, core::Real, core::Real) | protocols::scoring::methods::saxs::PDDFEnergy | |
| d_ | protocols::scoring::methods::saxs::PDDFEnergy | private |
| defines_high_order_terms(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| dmatrix_ | protocols::scoring::methods::saxs::PDDFEnergy | mutableprivate |
| EnergyMethod(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | |
| eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const | core::scoring::methods::EnergyMethod | virtual |
| evaluate_pddf_energy(const core::pose::Pose &pose) const | protocols::scoring::methods::saxs::PDDFEnergy | |
| factors_ | protocols::scoring::methods::saxs::PDDFEnergy | mutableprivate |
| ff_manager_ | protocols::scoring::methods::saxs::PDDFEnergy | private |
| finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | virtual |
| finalize_after_minimizing(pose::Pose &pose) const | core::scoring::methods::EnergyMethod | virtual |
| finalize_total_energy(core::pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const override | protocols::scoring::methods::saxs::PDDFEnergy | virtual |
| get_dist_bins() | protocols::scoring::methods::saxs::PDDFEnergy | inline |
| get_pddf() | protocols::scoring::methods::saxs::PDDFEnergy | inline |
| has_atomistic_energies() const | core::scoring::methods::EnergyMethod | virtual |
| has_atomistic_pairwise_energies() const | core::scoring::methods::EnergyMethod | virtual |
| if_fit_area_ | protocols::scoring::methods::saxs::PDDFEnergy | private |
| if_hydrogens_ | protocols::scoring::methods::saxs::PDDFEnergy | private |
| indicate_required_context_graphs(utility::vector1< bool > &) const override | protocols::scoring::methods::saxs::PDDFEnergy | inlinevirtual |
| is_glob_ | protocols::scoring::methods::saxs::PDDFEnergy | mutableprivate |
| max_bin_ | protocols::scoring::methods::saxs::PDDFEnergy | private |
| method_type() const override | core::scoring::methods::WholeStructureEnergy | virtual |
| min_bin_ | protocols::scoring::methods::saxs::PDDFEnergy | private |
| minimize_in_whole_structure_context(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| norm_ | protocols::scoring::methods::saxs::PDDFEnergy | private |
| parent typedef | core::scoring::methods::WholeStructureEnergy | |
| PDDFEnergy() | protocols::scoring::methods::saxs::PDDFEnergy | |
| PDDFEnergy(utility::vector1< core::Real > const &, utility::vector1< core::Real > const &) | protocols::scoring::methods::saxs::PDDFEnergy | |
| pose_pddf_ | protocols::scoring::methods::saxs::PDDFEnergy | mutableprivate |
| prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const | core::scoring::methods::EnergyMethod | virtual |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | core::scoring::methods::EnergyMethod | virtual |
| r_ids_ | protocols::scoring::methods::saxs::PDDFEnergy | mutableprivate |
| read_pddf(std::string) | protocols::scoring::methods::saxs::PDDFEnergy | private |
| reference_pddf_ | protocols::scoring::methods::saxs::PDDFEnergy | private |
| requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) const | core::scoring::methods::EnergyMethod | virtual |
| score_types() const | core::scoring::methods::EnergyMethod | inline |
| score_types_ | core::scoring::methods::EnergyMethod | private |
| set_score_types(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | protected |
| setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_scoring(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) const | core::scoring::methods::EnergyMethod | virtual |
| show_additional_info(std::ostream &, pose::Pose &, bool) const | core::scoring::methods::EnergyMethod | virtual |
| update_residue_for_packing(pose::Pose &, Size resid) const | core::scoring::methods::EnergyMethod | virtual |
| version() const override | protocols::scoring::methods::saxs::PDDFEnergy | privatevirtual |
| WholeStructureEnergy(EnergyMethodCreatorOP) | core::scoring::methods::WholeStructureEnergy | |
| ~PDDFEnergy() override | protocols::scoring::methods::saxs::PDDFEnergy | inline |
| ~WholeStructureEnergy() override | core::scoring::methods::WholeStructureEnergy | inline |
