| acknowledge_neighbors_state_zeroed(Size seqpos) | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| acknowledge_neighbors_substitution() | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| add_background_edge(BackgroundToFirstClassEdge< V, E, G > *edge) | core::pack::interaction_graph::FirstClassNode< V, E, G > | |
| adjacent_bg_node_indices_ | core::pack::interaction_graph::FirstClassNode< V, E, G > | private |
| alt_atom_hbonds_ | core::pack::interaction_graph::NPDHBondNode< V, E, G > | private |
| alt_hbonds_ | core::pack::interaction_graph::NPDHBondNode< V, E, G > | private |
| alt_state_rotamer() const | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| alt_state_rotamer_op() const | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| alternate_hbs() | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| alternate_hbs_for_atom(Size atom_index) | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| alternate_hbs_for_atoms() | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| assign_zero_state() override | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| BackgroundEdgeList typedef | core::pack::interaction_graph::FirstClassNode< V, E, G > | |
| BackgroundEdgeListIter typedef | core::pack::interaction_graph::FirstClassNode< V, E, G > | |
| BackgroundEdgeVector typedef | core::pack::interaction_graph::FirstClassNode< V, E, G > | |
| BackgroundEdgeVectorIter typedef | core::pack::interaction_graph::FirstClassNode< V, E, G > | |
| BackgroundNodeVector typedef | core::pack::interaction_graph::FirstClassNode< V, E, G > | |
| bg_edge_list_ | core::pack::interaction_graph::FirstClassNode< V, E, G > | private |
| bg_edge_vector_ | core::pack::interaction_graph::FirstClassNode< V, E, G > | private |
| bg_edge_vector_up_to_date_ | core::pack::interaction_graph::FirstClassNode< V, E, G > | private |
| bg_node_vector_ | core::pack::interaction_graph::FirstClassNode< V, E, G > | private |
| calculate_PD_deltaE_for_substitution(int alternate_state, core::PackerEnergy &prev_PDenergies_for_node) | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| commit_considered_substitution() | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| compute_alt_weights_for_hbonds(bool curr_state) | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| consider_alternate_state() | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| count_dynamic_memory() const override | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| count_static_memory() const override | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| curr_atom_hbonds_ | core::pack::interaction_graph::NPDHBondNode< V, E, G > | private |
| curr_hbonds_ | core::pack::interaction_graph::NPDHBondNode< V, E, G > | private |
| curr_state_rotamer() const | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| curr_state_rotamer_op() const | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| current_hbs() | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| drop_background_edge(BackgroundEdgeListIter edge) | core::pack::interaction_graph::FirstClassNode< V, E, G > | |
| FirstClassNode(G *owner, int node_id, int num_states) | core::pack::interaction_graph::FirstClassNode< V, E, G > | |
| FirstClassNode() | core::pack::interaction_graph::FirstClassNode< V, E, G > | private |
| FirstClassNode(FirstClassNode< V, E, G > const &) | core::pack::interaction_graph::FirstClassNode< V, E, G > | private |
| get_adjacent_background_node(int index) const | core::pack::interaction_graph::FirstClassNode< V, E, G > | inlineprotected |
| get_adjacent_background_node(int index) | core::pack::interaction_graph::FirstClassNode< V, E, G > | inlineprotected |
| get_adjacent_npd_hbond_bg_node(int index) const | core::pack::interaction_graph::NPDHBondNode< V, E, G > | inlineprotected |
| get_adjacent_npd_hbond_bg_node(int index) | core::pack::interaction_graph::NPDHBondNode< V, E, G > | inlineprotected |
| get_adjacent_npd_hbond_node(int index) const | core::pack::interaction_graph::NPDHBondNode< V, E, G > | inlineprotected |
| get_adjacent_npd_hbond_node(int index) | core::pack::interaction_graph::NPDHBondNode< V, E, G > | inlineprotected |
| get_bg_edge_vector_up_to_date_() const | core::pack::interaction_graph::FirstClassNode< V, E, G > | inlineprotected |
| get_edge_to_bg_node(int index) const | core::pack::interaction_graph::FirstClassNode< V, E, G > | inlineprotected |
| get_edge_to_bg_node(int index) | core::pack::interaction_graph::FirstClassNode< V, E, G > | inlineprotected |
| get_edge_to_npd_hbond_bg_node(int index) const | core::pack::interaction_graph::NPDHBondNode< V, E, G > | inlineprotected |
| get_edge_to_npd_hbond_bg_node(int index) | core::pack::interaction_graph::NPDHBondNode< V, E, G > | inlineprotected |
| get_incident_npd_hbond_edge(int index) const | core::pack::interaction_graph::NPDHBondNode< V, E, G > | inlineprotected |
| get_incident_npd_hbond_edge(int index) | core::pack::interaction_graph::NPDHBondNode< V, E, G > | inlineprotected |
| get_index_of_adjacent_background_node(int index) const | core::pack::interaction_graph::FirstClassNode< V, E, G > | inlineprotected |
| get_npd_hbond_owner() const | core::pack::interaction_graph::NPDHBondNode< V, E, G > | inlineprotected |
| get_npd_hbond_owner() | core::pack::interaction_graph::NPDHBondNode< V, E, G > | inlineprotected |
| get_num_edges_to_background_nodes() const | core::pack::interaction_graph::FirstClassNode< V, E, G > | inlineprotected |
| get_pd_energy_delta() | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| get_rotamer(int state) const | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| get_rotamer_op(int state) const | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| get_upper_npd_hbond_energy_totals() const | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| getMemoryUsageInBytes() const | core::pack::interaction_graph::NPDHBondNode< V, E, G > | virtual |
| grandparent typedef | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| max_natoms_ | core::pack::interaction_graph::NPDHBondNode< V, E, G > | private |
| NPDHBondNode(G *owner, int node_index, int num_states) | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| NPDHBondNode() | core::pack::interaction_graph::NPDHBondNode< V, E, G > | private |
| NPDHBondNode(NPDHBondNode< V, E, G > const &) | core::pack::interaction_graph::NPDHBondNode< V, E, G > | private |
| num_edges_to_bg_nodes_ | core::pack::interaction_graph::FirstClassNode< V, E, G > | private |
| operator=(NPDHBondNode< V, E, G > const &) | core::pack::interaction_graph::NPDHBondNode< V, E, G > | private |
| parent typedef | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| prepare_for_neighbors_substitution(Size nbrs_seqpos) | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| prepare_for_simulated_annealing() override | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| print() const override | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| reset_after_rejected_substitution() | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| restype_group_for_rotamers_ | core::pack::interaction_graph::NPDHBondNode< V, E, G > | private |
| rotamers_vector_ | core::pack::interaction_graph::NPDHBondNode< V, E, G > | private |
| seqpos() const | core::pack::interaction_graph::NPDHBondNode< V, E, G > | inline |
| seqpos_ | core::pack::interaction_graph::NPDHBondNode< V, E, G > | private |
| set_rotamers(rotamer_set::RotamerSetCOP rotamers) | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
| tmp_energies_ | core::pack::interaction_graph::NPDHBondNode< V, E, G > | private |
| tmp_weights_ | core::pack::interaction_graph::NPDHBondNode< V, E, G > | private |
| update_bg_edge_vector() | core::pack::interaction_graph::FirstClassNode< V, E, G > | protected |
| ~FirstClassNode() override | core::pack::interaction_graph::FirstClassNode< V, E, G > | |
| ~NPDHBondNode() override | core::pack::interaction_graph::NPDHBondNode< V, E, G > | |
