| assign_ligand_trans(core::Vector transv) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| crossover(LigandConformer const &l1, LigandConformer const &l2) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | friend |
| crossover_ft(LigandConformer const &l1, LigandConformer const &l2) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | friend |
| defined() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| density_score(core::Real scorein) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| density_score() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| density_score_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| distance_fast(LigandConformer &gene1, LigandConformer &gene2) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | friend |
| distance_internal(LigandConformer const &gene1, LigandConformer const &gene2) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | friend |
| distance_slow(LigandConformer &gene1, LigandConformer &gene2) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | friend |
| dump_pose(std::string pdbname) const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| freeze_ligand_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| freeze_ligand_backbone_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| generation_tag() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| generation_tag_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| get_jumpid() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| get_ligandchi(core::Size ichi) const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| get_ligandchis() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| get_ligchi_type(core::Size ndx) const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| get_ligchi_types() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| get_protein_chis(core::Size ires) const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| get_protein_restype(core::Size ires) const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| get_ref_pose() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| get_reference_ft() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| has_density_map() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| has_density_map_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| init_params() | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| initialize(core::pose::PoseCOP pose, utility::vector1< core::Size > const &ligids, utility::vector1< core::Size > movingscs, bool freeze_ligand_backbone, bool freeze_ligand) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| is_ligand_bb_frozen() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| is_ligand_frozen() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| is_ligand_terminal() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| jumpid_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| ligand_ids() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| ligand_residue(core::Size ires) const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| ligand_rg() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| ligand_typename() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| ligand_typename(core::Size i) const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| ligand_typenames_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| ligand_xyz() | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| ligandchi_downstream_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| ligandchi_types_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| ligandchis_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| LigandConformer() | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| LigandConformer(core::pose::PoseCOP pose, utility::vector1< core::Size > const &ligids, utility::vector1< core::Size > movingscs, bool freeze_ligand_backbone=false, bool freeze_ligand=false) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| ligandnus_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| ligandtaus_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| ligandtorsionids_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| ligandxyz_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| ligandxyz_synced_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| ligchimutWidth_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| ligid_restype_map_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| ligids_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| moving_scs() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| movingscs_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| mutate(LigandConformer const &l) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | friend |
| mutate_ft(LigandConformer const &l, bool single_mutation) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | friend |
| n_ligandchis() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| neg_Tds() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| negTdS_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| protein_residue(core::Size ires) const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| proteinchis_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| proteinrestypes_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| quat() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| randomize(core::Real transmax) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| rb_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| receptor() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| ref_pose_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| ref_pose_ligand_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| rg_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| rms(core::Real rmsin) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| rms() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| rms_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| rotmutWidth_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| rtmutationRate_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| sample_conformation(core::Real transmax, TorsionSamplerCOP const &sampler) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| sample_ring_conformers() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| sample_ring_conformers_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| score(core::Real scorein) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| score() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| score_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| set_chiwidth(core::Real setting) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| set_generation_tag(std::string tag) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| set_has_density_map(bool setting) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| set_ligandchi(core::Size ichi, core::Real value) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| set_moving_scs(utility::vector1< core::Size > setting) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| set_negTds(core::Real inval) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| set_protein_chis(core::Size ires, utility::vector1< core::Real > const &newchis) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| set_protein_restype(core::Size ires, core::chemical::ResidueTypeCOP restype) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| set_rotwidth(core::Real setting) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| set_rtmutrate(core::Real setting) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| set_sample_ring_conformers(bool setting) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| set_torsmutrate(core::Real setting) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| set_transwidth(core::Real setting) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| superimpose_to_ref_pose(utility::vector1< core::id::AtomID > const &ids) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| to_minipose(core::pose::PoseOP pose, LigandConformer &minilig) const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| to_pose(core::pose::PoseOP pose) const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| to_string() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| torsmutationRate_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| trans() const | protocols::ligand_docking::ga_ligand_dock::LigandConformer | inline |
| transmutWidth_ | protocols::ligand_docking::ga_ligand_dock::LigandConformer | private |
| update_conf(core::pose::PoseCOP pose) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| update_conf_from_minipose(core::pose::PoseCOP pose) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| update_ligand_conf(core::pose::PoseCOP pose) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| update_ligchi_types(core::conformation::Residue const &ligres) | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
| ~LigandConformer() override | protocols::ligand_docking::ga_ligand_dock::LigandConformer | |
