protocols::multistage_rosetta_scripts::cluster::metrics::JumpMetric Class Reference

#include <JumpMetric.hh>

Inheritance diagram for protocols::multistage_rosetta_scripts::cluster::metrics::JumpMetric:

Public Types
enum	DOF {   TRANS_X = 1 , TRANS_Y , TRANS_Z , ROT_X ,   ROT_Y , ROT_Z }
	This enum is not explicitly used but these match the index-numbering I'm using. More...

Public Member Functions
	JumpMetric ()
	JumpMetric (utility::vector1< core::Real > const &dofs)
	~JumpMetric () override
platform::Real	distance (JumpMetric const &other) const
	just counts number of mutations. Might someday use BLOSUM62 to create different weights More...
platform::Real	distance (ClusterMetric const &other) const override
	just counts number of mutations. Might someday use BLOSUM62 to create different weights More...
void	analyze (core::pose::Pose const &, unsigned int jump)
	measure and store the jump dimensions More...
void	parse_my_tag (core::pose::Pose const &, utility::tag::TagCOP tag, basic::datacache::DataMap &datacache) override
utility::vector1< core::Real > const &	dofs () const
Public Member Functions inherited from protocols::multistage_rosetta_scripts::cluster::ClusterMetric
	ClusterMetric ()
	~ClusterMetric () override

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
utility::vector1< core::Real >	dofs_

Member Enumeration Documentation

DOF

enum protocols::multistage_rosetta_scripts::cluster::metrics::JumpMetric::DOF

This enum is not explicitly used but these match the index-numbering I'm using.

Enumerator
TRANS_X
TRANS_Y
TRANS_Z
ROT_X
ROT_Y
ROT_Z

Constructor & Destructor Documentation

JumpMetric() [1/2]

protocols::multistage_rosetta_scripts::cluster::metrics::JumpMetric::JumpMetric

(

)

JumpMetric() [2/2]

protocols::multistage_rosetta_scripts::cluster::metrics::JumpMetric::JumpMetric

(

utility::vector1< core::Real > const &

dofs

)

~JumpMetric()

protocols::multistage_rosetta_scripts::cluster::metrics::JumpMetric::~JumpMetric ( )

override

Member Function Documentation

analyze()

void protocols::multistage_rosetta_scripts::cluster::metrics::JumpMetric::analyze	(	core::pose::Pose const &	pose,
		unsigned int	jump
	)

measure and store the jump dimensions

References dofs_, core::kinematics::Jump::get_rotation(), core::kinematics::Jump::get_translation(), and core::pose::Pose::jump().

Referenced by parse_my_tag().

distance() [1/2]

platform::Real protocols::multistage_rosetta_scripts::cluster::metrics::JumpMetric::distance ( ClusterMetric const &  other ) const

inlineoverridevirtual

just counts number of mutations. Might someday use BLOSUM62 to create different weights

Implements protocols::multistage_rosetta_scripts::cluster::ClusterMetric.

References distance().

distance() [2/2]

platform::Real protocols::multistage_rosetta_scripts::cluster::metrics::JumpMetric::distance

(

JumpMetric const &

other

)

const

just counts number of mutations. Might someday use BLOSUM62 to create different weights

References dofs_.

Referenced by distance().

dofs()

utility::vector1< core::Real > const& protocols::multistage_rosetta_scripts::cluster::metrics::JumpMetric::dofs ( ) const

inline

References dofs_.

parse_my_tag()

void protocols::multistage_rosetta_scripts::cluster::metrics::JumpMetric::parse_my_tag ( core::pose::Pose const &  pose, utility::tag::TagCOP  tag, basic::datacache::DataMap &  datacache  )

overridevirtual

Implements protocols::multistage_rosetta_scripts::cluster::ClusterMetric.

References analyze().

provide_xml_schema()

void protocols::multistage_rosetta_scripts::cluster::metrics::JumpMetric::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References protocols::multistage_rosetta_scripts::cluster::xsd_type_definition_w_attributes().

Referenced by protocols::multistage_rosetta_scripts::cluster::metrics::JumpMetricCreator::provide_xml_schema().

Member Data Documentation

dofs_

utility::vector1< core::Real > protocols::multistage_rosetta_scripts::cluster::metrics::JumpMetric::dofs_

private

Referenced by analyze(), distance(), and dofs().

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The documentation for this class was generated from the following files:

• src/protocols/multistage_rosetta_scripts/cluster/metrics/JumpMetric.hh
• src/protocols/multistage_rosetta_scripts/cluster/metrics/JumpMetric.cc