core::pack::guidance_scoreterms::voids_penalty_energy Namespace Reference

Classes
class	VoidsPenaltyEnergy
	VoidsPenaltyEnergy ("voids_penalty" score term), an EnergyMethod intended for packing, which penalizes solutions in which the total volume to fill differs greatly from the total volume of the current set of rotamers. More...
class	VoidsPenaltyEnergyCreator
class	VoidsPenaltyVoxelGrid
	A 3D boolean array used for identifying core voxels in the VoidsPenaltyEnergy. More...

Typedefs
typedef utility::pointer::shared_ptr< VoidsPenaltyEnergy >	VoidsPenaltyEnergyOP
typedef utility::pointer::shared_ptr< VoidsPenaltyEnergy const >	VoidsPenaltyEnergyCOP
typedef utility::pointer::shared_ptr< VoidsPenaltyVoxelGrid >	VoidsPenaltyVoxelGridOP
typedef utility::pointer::shared_ptr< VoidsPenaltyVoxelGrid const >	VoidsPenaltyVoxelGridCOP

Functions
static basic::Tracer	TR ("core.pack.voids_penalty_energy.VoidsPenaltyEnergy")

Typedef Documentation

VoidsPenaltyEnergyCOP

typedef utility::pointer::shared_ptr< VoidsPenaltyEnergy const > core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyEnergyCOP

VoidsPenaltyEnergyOP

typedef utility::pointer::shared_ptr< VoidsPenaltyEnergy > core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyEnergyOP

VoidsPenaltyVoxelGridCOP

typedef utility::pointer::shared_ptr< VoidsPenaltyVoxelGrid const > core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGridCOP

VoidsPenaltyVoxelGridOP

typedef utility::pointer::shared_ptr< VoidsPenaltyVoxelGrid > core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGridOP

Function Documentation

TR()

static basic::Tracer core::pack::guidance_scoreterms::voids_penalty_energy::TR ( "core.pack.voids_penalty_energy.VoidsPenaltyEnergy"  )

static

Referenced by core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid::compute_bounding_box(), core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid::compute_burial(), core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyEnergy::finalize_after_minimizing(), core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyEnergy::finalize_total_energy(), core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid::prune_voxels_for_fixed_residues(), core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyEnergy::report(), core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid::resize_voxel_grid(), core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyEnergy::set_up_residuearrayannealableenergy_for_packing(), core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyEnergy::setup_for_minimizing(), and core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyEnergy::VoidsPenaltyEnergy().