protocols::generalized_kinematic_closure::perturber Namespace Reference

Classes
class	GeneralizedKICperturber

Typedefs
typedef utility::pointer::shared_ptr< GeneralizedKICperturber >	GeneralizedKICperturberOP
typedef utility::pointer::shared_ptr< GeneralizedKICperturber const >	GeneralizedKICperturberCOP
typedef utility::vector1< GeneralizedKICperturberOP >	GeneralizedKICperturberOPs
typedef utility::vector1< GeneralizedKICperturberCOP >	GeneralizedKICperturberCOPs

Enumerations
enum class	GenKICPerturberEffect { set = 1 , randomize , perturb }
enum	perturber_effect {   no_effect = 1 , set_dihedral , set_bondangle , set_bondlength ,   set_backbone_bin , randomize_dihedral , randomize_alpha_backbone_by_rama , randomize_backbone_by_rama_prepro ,   randomize_backbone_by_bins , perturb_bondlength , perturb_bondangle , perturb_dihedral ,   perturb_dihedral_bbg , perturb_backbone_by_bins , copy_backbone_dihedrals , mirror_backbone_dihedrals ,   sample_cis_peptide_bond , unknown_effect , end_of_effect_list = unknown_effect }
	The effect of the perturber (e.g. randomizing alpha-amino acid phi/psi angles, altering side-chains, etc.) More...

Functions
static basic::Tracer	TR ("protocols.generalized_kinematic_closure.perturber.GeneralizedKICperturber")

Typedef Documentation

GeneralizedKICperturberCOP

typedef utility::pointer::shared_ptr< GeneralizedKICperturber const > protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturberCOP

GeneralizedKICperturberCOPs

typedef utility::vector1<GeneralizedKICperturberCOP> protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturberCOPs

GeneralizedKICperturberOP

typedef utility::pointer::shared_ptr< GeneralizedKICperturber > protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturberOP

GeneralizedKICperturberOPs

typedef utility::vector1<GeneralizedKICperturberOP> protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturberOPs

Enumeration Type Documentation

GenKICPerturberEffect

enum protocols::generalized_kinematic_closure::perturber::GenKICPerturberEffect

strong

Enumerator
set
randomize
perturb

perturber_effect

enum protocols::generalized_kinematic_closure::perturber::perturber_effect

The effect of the perturber (e.g. randomizing alpha-amino acid phi/psi angles, altering side-chains, etc.)

Perturbation effects starting with "set" set parameters to defined values (e.g. set the third phi angle to 45 degrees). Perturbation effects starting with "randomize" set parameters based on random distributions, with no consideration of the initial value. Perturbation effects starting with "jitter" set parameters to some new value based on a random distribution about the initial value.

Enumerator
no_effect
set_dihedral
set_bondangle
set_bondlength
set_backbone_bin
randomize_dihedral
randomize_alpha_backbone_by_rama
randomize_backbone_by_rama_prepro
randomize_backbone_by_bins
perturb_bondlength
perturb_bondangle
perturb_dihedral
perturb_dihedral_bbg
perturb_backbone_by_bins
copy_backbone_dihedrals
mirror_backbone_dihedrals
sample_cis_peptide_bond
unknown_effect
end_of_effect_list

Function Documentation

TR()

static basic::Tracer protocols::generalized_kinematic_closure::perturber::TR ( "protocols.generalized_kinematic_closure.perturber.GeneralizedKICperturber"  )

static

Referenced by protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturber::apply_perturb_dihedral_bbg(), protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturber::apply_randomize_alpha_backbone_by_rama(), protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturber::apply_randomize_backbone_by_rama_prepro(), protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturber::apply_sample_cis_peptide_bond(), protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturber::apply_set_bondangle(), protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturber::apply_set_bondlength(), protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturber::apply_set_dihedral(), and protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturber::load_bin_params().