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core::pack::annealer::FASTERAnnealer Member List

This is the complete list of members for core::pack::annealer::FASTERAnnealer, including all inherited members.

assign_state_to_all_nodes_immediately_core::pack::annealer::RotamerAssigningAnnealerprivate
bestenergy()core::pack::annealer::SimAnnealerBaseprotected
bestenergy_core::pack::annealer::SimAnnealerBaseprivate
bestrotamer_at_seqpos()core::pack::annealer::SimAnnealerBaseprotected
bestrotamer_at_seqpos() constcore::pack::annealer::SimAnnealerBaseprotected
bestrotamer_at_seqpos_core::pack::annealer::SimAnnealerBaseprivate
calc_freq_tempcore::pack::annealer::SimAnnealerBaseprotectedstatic
calc_rot_freq() constcore::pack::annealer::SimAnnealerBaseprotected
calc_rot_freq_core::pack::annealer::SimAnnealerBaseprivate
ciBR()core::pack::annealer::FASTERAnnealerprivate
ciBR_only_core::pack::annealer::FASTERAnnealerprivate
clear()core::pack::annealer::SimAnnealerBaseprotected
curr_in_recent_history_core::pack::annealer::FASTERAnnealerprivate
current_rot_index()core::pack::annealer::SimAnnealerBaseprotected
current_rot_index() constcore::pack::annealer::SimAnnealerBaseprotected
current_rot_index_core::pack::annealer::SimAnnealerBaseprivate
current_to_pick_core::pack::annealer::RotamerAssigningAnnealerprivate
dBR()core::pack::annealer::FASTERAnnealerprivate
disallow_quench_core::pack::annealer::SimAnnealerBaseprivate
FASTERAnnealer(ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, interaction_graph::FASTERInteractionGraphOP ig, FixbbRotamerSetsCOP rotamer_sets, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq)core::pack::annealer::FASTERAnnealer
finalize_output()core::pack::annealer::FASTERAnnealerprivate
FixbbRotamerSetsCOP typedefcore::pack::annealer::FASTERAnnealer
get_annealer_observer()core::pack::annealer::SimAnnealerBaseinline
get_annealer_observer() constcore::pack::annealer::SimAnnealerBaseinline
get_calc_rot_freq() constcore::pack::annealer::SimAnnealerBase
get_hightemp() constcore::pack::annealer::SimAnnealerBaseinlineprotected
get_inneriterations() constcore::pack::annealer::SimAnnealerBase
get_lowtemp() constcore::pack::annealer::SimAnnealerBaseinlineprotected
get_outeriterations() constcore::pack::annealer::SimAnnealerBase
get_start_with_current() constcore::pack::annealer::SimAnnealerBase
get_temperature() constcore::pack::annealer::SimAnnealerBase
hash_recent_history(int history_index)core::pack::annealer::FASTERAnnealerprivate
hash_size_core::pack::annealer::FASTERAnnealerprivatestatic
hightempcore::pack::annealer::SimAnnealerBaseprotectedstatic
hightemp_core::pack::annealer::SimAnnealerBaseprivate
iBR()core::pack::annealer::FASTERAnnealerprivate
ig_core::pack::annealer::FASTERAnnealerprivate
inneriterations_core::pack::annealer::SimAnnealerBaseprivate
inneriterations_scaling_core::pack::annealer::SimAnnealerBaseprivate
jump_core::pack::annealer::SimAnnealerBaseprivate
low_temp_annealing_core::pack::annealer::SimAnnealerBaseprivate
lowtempcore::pack::annealer::SimAnnealerBaseprotectedstatic
lowtemp_core::pack::annealer::SimAnnealerBaseprivate
maxouteriterationscore::pack::annealer::SimAnnealerBaseprotectedstatic
n_assigned_at_start_core::pack::annealer::RotamerAssigningAnnealerprivate
netstate_duplicated_core::pack::annealer::FASTERAnnealerprivate
note_current_network_state(ObjexxFCL::FArray1_int const &netstate)core::pack::annealer::FASTERAnnealerprivate
num_nodes_core::pack::annealer::FASTERAnnealerprivate
num_rots_to_pack() constcore::pack::annealer::SimAnnealerBaseinlineprotected
num_rots_to_pack(Size setting)core::pack::annealer::SimAnnealerBaseprotected
num_rots_to_pack_core::pack::annealer::SimAnnealerBaseprivate
num_sa_trajectories_core::pack::annealer::FASTERAnnealerprivate
observer_core::pack::annealer::SimAnnealerBaseprivate
outeriterations_core::pack::annealer::SimAnnealerBaseprivate
outeriterations_scaling_core::pack::annealer::SimAnnealerBaseprivate
parent typedefcore::pack::annealer::FASTERAnnealer
pass_metropolis(core::PackerEnergy delta_energy) constcore::pack::annealer::SimAnnealerBase
pass_metropolis(core::PackerEnergy previous_energy, core::PackerEnergy delta_energy) constcore::pack::annealer::SimAnnealerBase
pick_a_rotamer(int cycle)core::pack::annealer::RotamerAssigningAnnealer
pick_a_rotamer_for_node(int node) constcore::pack::annealer::RotamerAssigningAnnealer
pick_a_rotamer_for_sBR()core::pack::annealer::FASTERAnnealerprivate
pick_rotamer_for_node(int node)core::pack::annealer::FASTERAnnealerprivate
progress_through_sBR_core::pack::annealer::FASTERAnnealerprivate
quench() constcore::pack::annealer::SimAnnealerBase
quench_core::pack::annealer::SimAnnealerBaseprivate
recent_history_hash_count_core::pack::annealer::FASTERAnnealerprivate
recent_history_hash_values_core::pack::annealer::FASTERAnnealerprivate
recent_history_head_core::pack::annealer::FASTERAnnealerprivate
recent_history_size_core::pack::annealer::FASTERAnnealerprivatestatic
recent_network_state_history_core::pack::annealer::FASTERAnnealerprivate
reset_recent_network_state_history()core::pack::annealer::FASTERAnnealerprivate
rot_freq()core::pack::annealer::SimAnnealerBaseprotected
rot_freq() constcore::pack::annealer::SimAnnealerBaseprotected
rot_freq_core::pack::annealer::SimAnnealerBaseprivate
rot_to_pack() constcore::pack::annealer::RotamerAssigningAnnealerprotected
rot_to_pack_core::pack::annealer::RotamerAssigningAnnealerprivate
rotamer_sets() constcore::pack::annealer::RotamerAssigningAnnealerprotected
rotamer_sets_core::pack::annealer::FASTERAnnealerprivate
RotamerAssigningAnnealer(int num_of_rot_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, FixbbRotamerSetsCOP p_rotamer_set, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq)core::pack::annealer::RotamerAssigningAnnealer
RotamerAssigningAnnealer(utility::vector0< int > &rot_to_pack, int num_of_rot_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, FixbbRotamerSetsCOP p_rotamer_set, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq)core::pack::annealer::RotamerAssigningAnnealer
RotamerSetsBaseCOP typedefcore::pack::annealer::SimAnnealerBase
rots_for_nodes_core::pack::annealer::RotamerAssigningAnnealerprivate
run() overridecore::pack::annealer::FASTERAnnealervirtual
run_quench_cycles()core::pack::annealer::FASTERAnnealerprivate
sa_inner_iterations_length_scale_core::pack::annealer::FASTERAnnealerprivate
sBR()core::pack::annealer::FASTERAnnealerprivate
sBR_limit_core::pack::annealer::FASTERAnnealerprivate
sBR_rotamers_core::pack::annealer::FASTERAnnealerprivate
scale_inneriterations(core::PackerEnergy const si)core::pack::annealer::SimAnnealerBaseinline
scale_outeriterations(core::PackerEnergy const so)core::pack::annealer::SimAnnealerBaseinline
set_annealer_observer(AnnealerObserverOP obs)core::pack::annealer::SimAnnealerBaseinline
set_assign_state_to_all_nodes_immediately(bool setting)core::pack::annealer::RotamerAssigningAnnealer
set_ciBR_only(bool setting)core::pack::annealer::FASTERAnnealer
set_disallow_quench(bool const &setting)core::pack::annealer::SimAnnealerBase
set_hightemp(core::PackerEnergy)core::pack::annealer::SimAnnealerBase
set_lowtemp(core::PackerEnergy)core::pack::annealer::SimAnnealerBase
set_not_to_quench()core::pack::annealer::SimAnnealerBase
set_num_sa_trajectories(int setting)core::pack::annealer::FASTERAnnealer
set_sa_length_scale(Real setting)core::pack::annealer::FASTERAnnealer
set_temperature(core::PackerEnergy new_temperature)core::pack::annealer::SimAnnealerBase
set_to_quench()core::pack::annealer::SimAnnealerBase
setup_iterations()core::pack::annealer::SimAnnealerBase
setup_iterations(const int &num_of_state_changes)core::pack::annealer::SimAnnealerBase
setup_rots_for_node(FixbbRotamerSetsCOP rotamer_sets)core::pack::annealer::RotamerAssigningAnnealerprivate
setup_temperature(const int &nn)core::pack::annealer::SimAnnealerBase
setup_temperature(const ObjexxFCL::FArray1D< core::PackerEnergy > &loopenergy, int nn)core::pack::annealer::SimAnnealerBase
shuffle_sBR_rotamers()core::pack::annealer::FASTERAnnealerprivate
SimAnnealerBase(int num_rots_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq)core::pack::annealer::SimAnnealerBase
SimAnnealerBase(const SimAnnealerBase &rhs)core::pack::annealer::SimAnnealerBaseprivate
start_with_current() constcore::pack::annealer::SimAnnealerBaseprotected
start_with_current_core::pack::annealer::SimAnnealerBaseprivate
stuck_in_network_state_loop()core::pack::annealer::FASTERAnnealerprivate
temperature_core::pack::annealer::SimAnnealerBaseprivate
trySeveral_ciBRs()core::pack::annealer::FASTERAnnealerprivate
~FASTERAnnealer() overridecore::pack::annealer::FASTERAnnealer
~RotamerAssigningAnnealer() overridecore::pack::annealer::RotamerAssigningAnnealer
~SimAnnealerBase() overridecore::pack::annealer::SimAnnealerBase
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