EsmPerplexityTensorflowProtocol.hh File Reference

A class for predicting probabilities of amino acids P(Sequence|Sequence) using the ESM language model. More...

#include <protocols/esm_perplexity/EsmPerplexityTensorflowProtocol.fwd.hh>
#include <utility/pointer/owning_ptr.hh>
#include <utility/io/ozstream.hh>
#include <core/sequence/SequenceProfile.hh>
#include <basic/citation_manager/CitationCollectionBase.fwd.hh>
#include <basic/tensorflow_manager/RosettaTensorflowTensorContainer.hh>
#include <basic/tensorflow_manager/RosettaTensorflowProtocolBase.hh>
#include <basic/tensorflow_manager/RosettaTensorflowSessionContainer.hh>
#include <basic/tensorflow_manager/RosettaTensorflowSessionContainer.fwd.hh>
#include <basic/tensorflow_manager/RosettaTensorflowSessionContainer.tmpl.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/select/residue_selector/ResidueSelector.fwd.hh>
#include <core/types.hh>
#include <core/pose/Pose.fwd.hh>
#include <map>

Classes
class	protocols::esm_perplexity::EsmPerplexityTensorflowProtocol
	Protocol to predict amino acid probabilities using the ESM language model family. More...

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::esm_perplexity

Detailed Description

A class for predicting probabilities of amino acids P(Sequence|Sequence) using the ESM language model.

Author

Moritz Ertelt (morit.nosp@m.z.er.nosp@m.telt@.nosp@m.goog.nosp@m.lemai.nosp@m.l.co.nosp@m.m)