protocols::magnesium::MgScanner Member List

This is the complete list of members for protocols::magnesium::MgScanner, including all inherited members.

apply(core::pose::Pose &pose) override	protocols::magnesium::MgScanner	virtual
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
cluster_mg()	protocols::magnesium::MgScanner	private
create()	protocols::moves::Mover	virtual
current_job_	protocols::moves::Mover	private
current_tag_	protocols::moves::Mover	private
distance_to_closest_magnesium(core::Vector const &mg_position, core::pose::Pose const &reference_pose)	protocols::magnesium::MgScanner	private
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::magnesium::MgScanner	inlinevirtual
get_native_pose() const	protocols::moves::Mover
get_score(core::pose::Pose &pose, core::Vector const &mg_position, core::scoring::ScoreFunctionCOP scorefxn, bool const hydrate_magnesium=false, bool const keep_waters=false, bool const minimize=false)	protocols::magnesium::MgScanner	private
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_single_mg_pose()	protocols::magnesium::MgScanner	private
get_type() const	protocols::moves::Mover	inline
get_unique_mg_res(core::pose::Pose const &mg_pose)	protocols::magnesium::MgScanner	private
hydrate() const	protocols::magnesium::MgScanner	inline
hydrate_	protocols::magnesium::MgScanner	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
info_	protocols::moves::Mover	private
input_pose_	protocols::moves::Mover	private
input_scan_res() const	protocols::magnesium::MgScanner	inline
input_scan_res_	protocols::magnesium::MgScanner	private
integration_test() const	protocols::magnesium::MgScanner	inline
integration_test_	protocols::magnesium::MgScanner	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
last_status_	protocols::moves::Mover	private
mg_poses	protocols::magnesium::MgScanner	private
mg_poses_	protocols::magnesium::MgScanner	private
MgScanner()	protocols::magnesium::MgScanner
minimize() const	protocols::magnesium::MgScanner	inline
minimize_	protocols::magnesium::MgScanner	private
minimize_during_scoring() const	protocols::magnesium::MgScanner	inline
minimize_during_scoring_	protocols::magnesium::MgScanner	private
minimize_mg_coord_constraint_distance() const	protocols::magnesium::MgScanner	inline
minimize_mg_coord_constraint_distance_	protocols::magnesium::MgScanner	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
native_pose_	protocols::moves::Mover	private
output_mg_into_one_PDB(core::pose::Pose const &pose)	protocols::magnesium::MgScanner	private
output_mg_to_silent_file(std::string const &silent_file)	protocols::magnesium::MgScanner	private
output_pdb() const	protocols::magnesium::MgScanner	inline
output_pdb_	protocols::magnesium::MgScanner	private
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
scan_magnesiums(core::pose::Pose &pose)	protocols::magnesium::MgScanner	private
score_cut() const	protocols::magnesium::MgScanner	inline
score_cut_	protocols::magnesium::MgScanner	private
score_cut_PDB() const	protocols::magnesium::MgScanner	inline
score_cut_PDB_	protocols::magnesium::MgScanner	private
scorefxn() const	protocols::magnesium::MgScanner	inline
scorefxn_	protocols::magnesium::MgScanner	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_hydrate(bool const &setting)	protocols::magnesium::MgScanner	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_input_scan_res(utility::vector1< core::Size > const &setting)	protocols::magnesium::MgScanner	inline
set_integration_test(bool const &setting)	protocols::magnesium::MgScanner	inline
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_minimize(bool const &setting)	protocols::magnesium::MgScanner	inline
set_minimize_during_scoring(bool const &setting)	protocols::magnesium::MgScanner	inline
set_minimize_mg_coord_constraint_distance(core::Distance const &setting)	protocols::magnesium::MgScanner	inline
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_output_pdb(std::string const &setting)	protocols::magnesium::MgScanner	inline
set_score_cut(core::Real const &setting)	protocols::magnesium::MgScanner	inline
set_score_cut_PDB(core::Real const &setting)	protocols::magnesium::MgScanner	inline
set_scorefxn(core::scoring::ScoreFunctionOP const &setting)	protocols::magnesium::MgScanner	inline
set_silent_file(std::string const &setting)	protocols::magnesium::MgScanner	inline
set_tether_to_closest_res(bool const &setting)	protocols::magnesium::MgScanner	inline
set_type(std::string const &setting)	protocols::moves::Mover	inline
set_xyz_step(core::Real const &setting)	protocols::magnesium::MgScanner	inline
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
silent_file() const	protocols::magnesium::MgScanner	inline
silent_file_	protocols::magnesium::MgScanner	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
tether_to_closest_res() const	protocols::magnesium::MgScanner	inline
tether_to_closest_res_	protocols::magnesium::MgScanner	private
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
type_	protocols::moves::Mover	private
xyz_step() const	protocols::magnesium::MgScanner	inline
xyz_step_	protocols::magnesium::MgScanner	private
~MgScanner() override	protocols::magnesium::MgScanner