StepWisePoseAligner.cc File Reference

#include <protocols/stepwise/modeler/align/StepWisePoseAligner.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/rna/util.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/util.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/tree/Atom.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pose/Pose.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/full_model_info/FullModelParameters.hh>
#include <core/pose/full_model_info/util.hh>
#include <core/pose/rna/util.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/func/FlatHarmonicFunc.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <utility/string_util.hh>
#include <ObjexxFCL/format.hh>
#include <basic/Tracer.hh>
#include <unordered_set>
#include <utility/stream_util.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::modeler
	protocols::stepwise::modeler::align

Functions
static basic::Tracer	TR ("protocols.stepwise.modeler.align.StepWisePoseAligner")
std::unordered_set< std::string > const	protocols::stepwise::modeler::align::extra_suite_atoms_upper ({ " P ", " OP1", " OP2", " O5'", "XO3'" })
std::unordered_set< std::string > const	protocols::stepwise::modeler::align::extra_suite_atoms_lower ({ " O ", "YP ","YOP2","YOP1","YO5'" })
bool	protocols::stepwise::modeler::align::match_up_to_rna_dna (char const nt1, char const nt2)

Detailed Description

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Function Documentation

TR()

static basic::Tracer TR ( "protocols.stepwise.modeler.align.StepWisePoseAligner"  )

static