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Namespaces | Enumerations
VariantType.hh File Reference

Enumeration definition for VariantType. More...

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::chemical
 

Enumerations

enum  core::chemical::VariantType {
  core::chemical::NO_VARIANT = 0 , core::chemical::FIRST_VARIANT = 1 , core::chemical::UPPER_TERMINUS_VARIANT = 1 , core::chemical::LOWER_TERMINUS_VARIANT ,
  core::chemical::UPPERTERM_TRUNC_VARIANT , core::chemical::LOWERTERM_TRUNC_VARIANT , core::chemical::PHOSPHONATE_UPPER_VARIANT , core::chemical::CUTPOINT_LOWER ,
  core::chemical::CUTPOINT_UPPER , core::chemical::NTERM_CONNECT , core::chemical::CTERM_CONNECT , core::chemical::DISULFIDE ,
  core::chemical::SC_BRANCH_POINT , core::chemical::C1_BRANCH_POINT , core::chemical::C2_BRANCH_POINT , core::chemical::C3_BRANCH_POINT ,
  core::chemical::C4_BRANCH_POINT , core::chemical::C5_BRANCH_POINT , core::chemical::C6_BRANCH_POINT , core::chemical::C7_BRANCH_POINT ,
  core::chemical::C8_BRANCH_POINT , core::chemical::C9_BRANCH_POINT , core::chemical::SIDECHAIN_CONJUGATION , core::chemical::SG_CONNECT ,
  core::chemical::NE2_CONNECT , core::chemical::ZN_CONNECT , core::chemical::VIRTUAL_METAL_CONJUGATION , core::chemical::METHYLATED_NTERM_VARIANT ,
  core::chemical::ACETYLATED_NTERMINUS_VARIANT , core::chemical::ACETYLATED_NTERMINUS_CONNECTION_VARIANT , core::chemical::METHYLATED_CTERMINUS_VARIANT , core::chemical::DIMETHYLATED_CTERMINUS_VARIANT ,
  core::chemical::OOP_PRE , core::chemical::OOP_POST , core::chemical::HBS_PRE , core::chemical::HBS_POST ,
  core::chemical::A3B_HBS_PRE , core::chemical::A3B_HBS_POST , core::chemical::CA_CONNECT , core::chemical::CA_CONNECT2 ,
  core::chemical::CA_CONNECT3 , core::chemical::CA_CONNECT4 , core::chemical::CA_CONNECT5 , core::chemical::CA_CONNECT6 ,
  core::chemical::CA_CONNECT7 , core::chemical::OE1_CONNECT , core::chemical::OE2_CONNECT , core::chemical::OD1_CONNECT ,
  core::chemical::OD2_CONNECT , core::chemical::O_CONNECT , core::chemical::OG_CONNECT , core::chemical::OG1_CONNECT ,
  core::chemical::PROTONATED , core::chemical::DEPROTONATED , core::chemical::ALTERNATIVE_PROTONATION , core::chemical::METHYLATION ,
  core::chemical::DIMETHYLATION , core::chemical::TRIMETHYLATION , core::chemical::ACETYLATION , core::chemical::PHOSPHORYLATION ,
  core::chemical::SULFATION , core::chemical::HYDROXYLATION , core::chemical::HYDROXYLATION1 , core::chemical::HYDROXYLATION2 ,
  core::chemical::CARBOXYLATION , core::chemical::DIIODINATION , core::chemical::N_METHYLATION , core::chemical::NTERM2_OXOBUTRYLATION ,
  core::chemical::VIRTUAL_BB , core::chemical::VIRTUAL_SIDE_CHAIN , core::chemical::VIRTUAL_RESIDUE_VARIANT , core::chemical::VIRTUAL_NTERM ,
  core::chemical::VIRTUAL_PHOSPHATE , core::chemical::VIRTUAL_DNA_PHOSPHATE , core::chemical::REPLS_BB , core::chemical::REPLONLY ,
  core::chemical::REPL_PHOSPHATE , core::chemical::VIRTUAL_RIBOSE , core::chemical::VIRTUAL_BACKBONE_EXCEPT_C1PRIME , core::chemical::VIRTUAL_BASE ,
  core::chemical::VIRTUAL_BASE_HEAVY_ATOM , core::chemical::VIRTUAL_RNA_RESIDUE , core::chemical::VIRTUAL_RNA_RESIDUE_EXCLUDE_PHOSPHATE , core::chemical::BULGE ,
  core::chemical::VIRTUAL_O2PRIME_HYDROGEN , core::chemical::THREE_PRIME_END_OH , core::chemical::THREE_PRIME_PHOSPHATE , core::chemical::THREE_PRIME_AZIDE ,
  core::chemical::THREE_PRIME_DEOXY , core::chemical::FIVE_PRIME_END_OH , core::chemical::FIVE_PRIME_THIOETHANOLAMINE_PHOSPHATE , core::chemical::FIVE_PRIME_END_PHOSPHATE ,
  core::chemical::FIVE_PRIME_PHOSPHATE , core::chemical::FIVE_PRIME_RME_PHOSPHATE , core::chemical::FIVEPRIME_CAP , core::chemical::THREE_PRIME_TWO_PRIME_CYCLIC_PHOSPHATE ,
  core::chemical::DEOXY_O2PRIME , core::chemical::UPPER_CONNECTION_RNA , core::chemical::THREE_PRIME_PACKABLE_PHOSPHATE , core::chemical::FIVE_PRIME_PACKABLE_PHOSPHATE ,
  core::chemical::FIVE_PRIME_PACKABLE_TRIPHOSPHATE , core::chemical::PROTONATED_N1 , core::chemical::PROTONATED_N3 , core::chemical::THREE_PRIME_FIVE_PRIME_METHYL_PHOSPHATE ,
  core::chemical::BLOCK_STACK_ABOVE , core::chemical::BLOCK_STACK_BELOW , core::chemical::N_ACETYLATION , core::chemical::N_FORMYLATION ,
  core::chemical::C_METHYLAMIDATION , core::chemical::CTERM_AMIDATION , core::chemical::C5_METHYLATED_NA , core::chemical::ALDONIC_ACID_VARIANT ,
  core::chemical::C2_KETOALDONIC_ACID , core::chemical::C3_KETOALDONIC_ACID , core::chemical::C4_KETOALDONIC_ACID , core::chemical::C5_KETOALDONIC_ACID ,
  core::chemical::C6_KETOALDONIC_ACID , core::chemical::C7_KETOALDONIC_ACID , core::chemical::C8_KETOALDONIC_ACID , core::chemical::URONIC_ACID_VARIANT ,
  core::chemical::C1_DEOXY_SUGAR , core::chemical::C2_DEOXY_SUGAR , core::chemical::C3_DEOXY_SUGAR , core::chemical::C4_DEOXY_SUGAR ,
  core::chemical::C5_DEOXY_SUGAR , core::chemical::C6_DEOXY_SUGAR , core::chemical::C7_DEOXY_SUGAR , core::chemical::C8_DEOXY_SUGAR ,
  core::chemical::C9_DEOXY_SUGAR , core::chemical::C1_AMINO_SUGAR , core::chemical::C2_AMINO_SUGAR , core::chemical::C3_AMINO_SUGAR ,
  core::chemical::C4_AMINO_SUGAR , core::chemical::C5_AMINO_SUGAR , core::chemical::C6_AMINO_SUGAR , core::chemical::C7_AMINO_SUGAR ,
  core::chemical::C8_AMINO_SUGAR , core::chemical::C9_AMINO_SUGAR , core::chemical::C1_ACETYLAMINO_SUGAR , core::chemical::C2_ACETYLAMINO_SUGAR ,
  core::chemical::C3_ACETYLAMINO_SUGAR , core::chemical::C4_ACETYLAMINO_SUGAR , core::chemical::C5_ACETYLAMINO_SUGAR , core::chemical::C6_ACETYLAMINO_SUGAR ,
  core::chemical::C7_ACETYLAMINO_SUGAR , core::chemical::C8_ACETYLAMINO_SUGAR , core::chemical::C9_ACETYLAMINO_SUGAR , core::chemical::C1_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR ,
  core::chemical::C2_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR , core::chemical::C3_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR , core::chemical::C4_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR , core::chemical::C5_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR ,
  core::chemical::C6_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR , core::chemical::C7_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR , core::chemical::C8_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR , core::chemical::C9_R3PRIMEHYDROXYBUTYRYLAMINO_SUGAR ,
  core::chemical::C1_PHOSPHORYLATED_SUGAR , core::chemical::C2_PHOSPHORYLATED_SUGAR , core::chemical::C3_PHOSPHORYLATED_SUGAR , core::chemical::C4_PHOSPHORYLATED_SUGAR ,
  core::chemical::C5_PHOSPHORYLATED_SUGAR , core::chemical::C6_PHOSPHORYLATED_SUGAR , core::chemical::C7_PHOSPHORYLATED_SUGAR , core::chemical::C8_PHOSPHORYLATED_SUGAR ,
  core::chemical::C9_PHOSPHORYLATED_SUGAR , core::chemical::C1_SULFATED_SUGAR , core::chemical::C2_SULFATED_SUGAR , core::chemical::C3_SULFATED_SUGAR ,
  core::chemical::C4_SULFATED_SUGAR , core::chemical::C5_SULFATED_SUGAR , core::chemical::C6_SULFATED_SUGAR , core::chemical::C7_SULFATED_SUGAR ,
  core::chemical::C8_SULFATED_SUGAR , core::chemical::C9_SULFATED_SUGAR , core::chemical::C1_SULFOAMINO_SUGAR , core::chemical::C2_SULFOAMINO_SUGAR ,
  core::chemical::C3_SULFOAMINO_SUGAR , core::chemical::C4_SULFOAMINO_SUGAR , core::chemical::C5_SULFOAMINO_SUGAR , core::chemical::C6_SULFOAMINO_SUGAR ,
  core::chemical::C7_SULFOAMINO_SUGAR , core::chemical::C8_SULFOAMINO_SUGAR , core::chemical::C9_SULFOAMINO_SUGAR , core::chemical::C1_THIO_SUGAR ,
  core::chemical::C2_THIO_SUGAR , core::chemical::C3_THIO_SUGAR , core::chemical::C4_THIO_SUGAR , core::chemical::C5_THIO_SUGAR ,
  core::chemical::C6_THIO_SUGAR , core::chemical::C7_THIO_SUGAR , core::chemical::C8_THIO_SUGAR , core::chemical::C9_THIO_SUGAR ,
  core::chemical::C1_METHYLATED_SUGAR , core::chemical::C2_METHYLATED_SUGAR , core::chemical::C3_METHYLATED_SUGAR , core::chemical::C4_METHYLATED_SUGAR ,
  core::chemical::C5_METHYLATED_SUGAR , core::chemical::C6_METHYLATED_SUGAR , core::chemical::C7_METHYLATED_SUGAR , core::chemical::C8_METHYLATED_SUGAR ,
  core::chemical::C9_METHYLATED_SUGAR , core::chemical::C1_PHOSPHATE , core::chemical::C2_PHOSPHATE , core::chemical::C3_PHOSPHATE ,
  core::chemical::C4_PHOSPHATE , core::chemical::C5_PHOSPHATE , core::chemical::C6_PHOSPHATE , core::chemical::C7_PHOSPHATE ,
  core::chemical::C8_PHOSPHATE , core::chemical::C9_PHOSPHATE , core::chemical::O1_ACETYL_SUGAR , core::chemical::O2_ACETYL_SUGAR ,
  core::chemical::O3_ACETYL_SUGAR , core::chemical::O4_ACETYL_SUGAR , core::chemical::O5_ACETYL_SUGAR , core::chemical::O6_ACETYL_SUGAR ,
  core::chemical::O7_ACETYL_SUGAR , core::chemical::O8_ACETYL_SUGAR , core::chemical::O9_ACETYL_SUGAR , core::chemical::O1_BUTYRYL_SUGAR ,
  core::chemical::O2_BUTYRYL_SUGAR , core::chemical::O3_BUTYRYL_SUGAR , core::chemical::O4_BUTYRYL_SUGAR , core::chemical::O5_BUTYRYL_SUGAR ,
  core::chemical::O6_BUTYRYL_SUGAR , core::chemical::O7_BUTYRYL_SUGAR , core::chemical::O8_BUTYRYL_SUGAR , core::chemical::O9_BUTYRYL_SUGAR ,
  core::chemical::O1_PROPARGYL_SUGAR , core::chemical::O2_PROPARGYL_SUGAR , core::chemical::O3_PROPARGYL_SUGAR , core::chemical::O4_PROPARGYL_SUGAR ,
  core::chemical::O5_PROPARGYL_SUGAR , core::chemical::O6_PROPARGYL_SUGAR , core::chemical::O7_PROPARGYL_SUGAR , core::chemical::O8_PROPARGYL_SUGAR ,
  core::chemical::O9_PROPARGYL_SUGAR , core::chemical::O1_LACTYL_SUGAR , core::chemical::O2_LACTYL_SUGAR , core::chemical::O3_LACTYL_SUGAR ,
  core::chemical::O4_LACTYL_SUGAR , core::chemical::O5_LACTYL_SUGAR , core::chemical::O6_LACTYL_SUGAR , core::chemical::O7_LACTYL_SUGAR ,
  core::chemical::O8_LACTYL_SUGAR , core::chemical::O9_LACTYL_SUGAR , core::chemical::C1_GLYCOLYLAMINO_SUGAR , core::chemical::C2_GLYCOLYLAMINO_SUGAR ,
  core::chemical::C3_GLYCOLYLAMINO_SUGAR , core::chemical::C4_GLYCOLYLAMINO_SUGAR , core::chemical::C5_GLYCOLYLAMINO_SUGAR , core::chemical::C6_GLYCOLYLAMINO_SUGAR ,
  core::chemical::C7_GLYCOLYLAMINO_SUGAR , core::chemical::C8_GLYCOLYLAMINO_SUGAR , core::chemical::C9_GLYCOLYLAMINO_SUGAR , core::chemical::C1_FLUORO_SUGAR ,
  core::chemical::C2_FLUORO_SUGAR , core::chemical::C3_FLUORO_SUGAR , core::chemical::C4_FLUORO_SUGAR , core::chemical::C5_FLUORO_SUGAR ,
  core::chemical::C6_FLUORO_SUGAR , core::chemical::C7_FLUORO_SUGAR , core::chemical::C8_FLUORO_SUGAR , core::chemical::C9_FLUORO_SUGAR ,
  core::chemical::O1_METHYL_SUGAR , core::chemical::O2_METHYL_SUGAR , core::chemical::O3_METHYL_SUGAR , core::chemical::O4_METHYL_SUGAR ,
  core::chemical::O5_METHYL_SUGAR , core::chemical::O6_METHYL_SUGAR , core::chemical::O7_METHYL_SUGAR , core::chemical::O8_METHYL_SUGAR ,
  core::chemical::O9_METHYL_SUGAR , core::chemical::METHYL_GLYCOSIDE , core::chemical::TRIAZOLAMERN , core::chemical::TRIAZOLAMERC ,
  core::chemical::CA2_COORDINATION , core::chemical::MG2_COORDINATION , core::chemical::CU2_COORDINATION , core::chemical::CO2_COORDINATION ,
  core::chemical::FE2_COORDINATION , core::chemical::FE3_COORDINATION , core::chemical::MN2_COORDINATION , core::chemical::LA3_COORDINATION ,
  core::chemical::LU3_COORDINATION , core::chemical::TB3_COORDINATION , core::chemical::TM3_COORDINATION , core::chemical::DY3_COORDINATION ,
  core::chemical::YB3_COORDINATION , core::chemical::ADDUCT_VARIANT , core::chemical::CENTROID_WITH_HA , core::chemical::SPECIAL_ROT ,
  core::chemical::SC_FRAGMENT , core::chemical::SHOVE_BB , core::chemical::N_VARIANTS = SHOVE_BB
}
 Enumerators for all the ResidueType variants. More...
 

Detailed Description

Enumeration definition for VariantType.

Author
Labonte JWLab.nosp@m.onte.nosp@m.@jhu..nosp@m.edu
Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu) – updated for multi-threading
Note
DO NOT EDIT THIS FILE DIRECTLY! It is auto-generated. If you wish to edit it, modify the update_ResidueType_enum_files.py script.
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