protocols::rotamer_recovery::RotamerRecovery Class Reference

#include <RotamerRecovery.hh>

Inheritance diagram for protocols::rotamer_recovery::RotamerRecovery:

Public Member Functions
	RotamerRecovery ()
	default constructor More...
	RotamerRecovery (RRProtocolOP protocol, RRComparerOP comparer, RRReporterOP reporter)
	specify comparer and reporter More...
	~RotamerRecovery () override
	destructor More...
	RotamerRecovery (RotamerRecovery const &src)
	copy constructor More...
virtual void	reset_recovery ()
virtual void	register_options () const
core::Real	run (core::pose::Pose const &pose, core::scoring::ScoreFunction const &score_function, core::pack::task::PackerTask const &packer_task)
void	init_rotamer_recovery_with_options (RotamerRecovery &rotamer_recovery)
void	init_with_options ()
void	set_ignore_unrecognized_res (bool const ignore_unrecognized_res)
bool	get_ignore_unrecognized_res ()
virtual void	show (std::ostream &out) const
virtual void	show ()
virtual core::Real	recovery_rate () const

Private Attributes
RRProtocolOP	protocol_
RRComparerOP	comparer_
RRReporterOP	reporter_
bool	ignore_unrecognized_res_

Constructor & Destructor Documentation

RotamerRecovery() [1/3]

protocols::rotamer_recovery::RotamerRecovery::RotamerRecovery

(

)

default constructor

RotamerRecovery() [2/3]

protocols::rotamer_recovery::RotamerRecovery::RotamerRecovery	(	RRProtocolOP	protocol,
		RRComparerOP	comparer,
		RRReporterOP	reporter
	)

specify comparer and reporter

References comparer_, protocol_, and reporter_.

~RotamerRecovery()

protocols::rotamer_recovery::RotamerRecovery::~RotamerRecovery ( )

overridedefault

destructor

RotamerRecovery() [3/3]

protocols::rotamer_recovery::RotamerRecovery::RotamerRecovery

(

RotamerRecovery const &

src

)

copy constructor

Member Function Documentation

get_ignore_unrecognized_res()

bool protocols::rotamer_recovery::RotamerRecovery::get_ignore_unrecognized_res

(

)

References ignore_unrecognized_res_.

init_rotamer_recovery_with_options()

void protocols::rotamer_recovery::RotamerRecovery::init_rotamer_recovery_with_options

(

RotamerRecovery &

rotamer_recovery

)

References core::pack::rotamer_recovery().

Referenced by init_with_options().

init_with_options()

void protocols::rotamer_recovery::RotamerRecovery::init_with_options

(

)

References init_rotamer_recovery_with_options().

recovery_rate()

Real protocols::rotamer_recovery::RotamerRecovery::recovery_rate ( ) const

virtual

References reporter_.

register_options()

void protocols::rotamer_recovery::RotamerRecovery::register_options ( ) const

virtual

reset_recovery()

void protocols::rotamer_recovery::RotamerRecovery::reset_recovery ( )

virtual

References reporter_.

run()

Real protocols::rotamer_recovery::RotamerRecovery::run	(	core::pose::Pose const &	pose,
		core::scoring::ScoreFunction const &	score_function,
		core::pack::task::PackerTask const &	packer_task
	)

References comparer_, protocol_, and reporter_.

set_ignore_unrecognized_res()

void protocols::rotamer_recovery::RotamerRecovery::set_ignore_unrecognized_res

(

bool const

ignore_unrecognized_res

)

References ignore_unrecognized_res_.

show() [1/2]

void protocols::rotamer_recovery::RotamerRecovery::show ( )

virtual

References reporter_, and protocols::rotamer_recovery::TR().

show() [2/2]

void protocols::rotamer_recovery::RotamerRecovery::show ( std::ostream &  out ) const

virtual

References core::conformation::membrane::out, and reporter_.

Member Data Documentation

comparer_

RRComparerOP protocols::rotamer_recovery::RotamerRecovery::comparer_

private

Referenced by RotamerRecovery(), and run().

ignore_unrecognized_res_

bool protocols::rotamer_recovery::RotamerRecovery::ignore_unrecognized_res_

private

Referenced by get_ignore_unrecognized_res(), and set_ignore_unrecognized_res().

protocol_

RRProtocolOP protocols::rotamer_recovery::RotamerRecovery::protocol_

private

Referenced by RotamerRecovery(), and run().

reporter_

RRReporterOP protocols::rotamer_recovery::RotamerRecovery::reporter_

private

Referenced by recovery_rate(), reset_recovery(), RotamerRecovery(), run(), and show().

---

The documentation for this class was generated from the following files:

• src/protocols/rotamer_recovery/RotamerRecovery.hh
• src/protocols/rotamer_recovery/RotamerRecovery.cc