core::sequence::Cell Class Reference

#include <DP_Matrix.hh>

Inheritance diagram for core::sequence::Cell:

Public Member Functions
	Cell ()
	Cell (Real const &sc, AlignMove const &ty=end)
	~Cell () override
void	score (const Real &score)
Real	score () const
Cell &	operator= (Cell const &c)
void	next (CellOP n)
CellOP	next ()
AlignMove	came_from ()
void	came_from (AlignMove const &type)
void	x (Size const &s)
void	y (Size const &s)
Size	x ()
Size	y ()

Private Attributes
Real	score_
CellOP	backptr_
AlignMove	type_
utility::vector1< Size >	coords_

Constructor & Destructor Documentation

Cell() [1/2]

core::sequence::Cell::Cell ( )

inline

Cell() [2/2]

core::sequence::Cell::Cell ( Real const &  sc, AlignMove const &  ty = end  )

inline

References backptr_, came_from(), and score().

~Cell()

core::sequence::Cell::~Cell ( )

overridedefault

Member Function Documentation

came_from() [1/2]

AlignMove core::sequence::Cell::came_from ( )

inline

References type_.

Referenced by Cell().

came_from() [2/2]

void core::sequence::Cell::came_from ( AlignMove const &  type )

inline

References type_.

next() [1/2]

CellOP core::sequence::Cell::next ( )

inline

References backptr_.

next() [2/2]

void core::sequence::Cell::next ( CellOP  n )

inline

References backptr_.

operator=()

Cell& core::sequence::Cell::operator= ( Cell const &  c )

inline

References score().

score() [1/2]

Real core::sequence::Cell::score ( ) const

inline

References score_.

Referenced by Cell(), operator=(), and score().

score() [2/2]

void core::sequence::Cell::score ( const Real &  score )

inline

References score(), and score_.

Referenced by operator=().

x() [1/2]

Size core::sequence::Cell::x ( )

inline

References coords_.

x() [2/2]

void core::sequence::Cell::x ( Size const &  s )

inline

References coords_.

y() [1/2]

Size core::sequence::Cell::y ( )

inline

References coords_.

y() [2/2]

void core::sequence::Cell::y ( Size const &  s )

inline

References coords_.

Member Data Documentation

backptr_

CellOP core::sequence::Cell::backptr_

private

Referenced by Cell(), and next().

coords_

utility::vector1< Size > core::sequence::Cell::coords_

private

Referenced by x(), and y().

score_

Real core::sequence::Cell::score_

private

Referenced by score().

type_

AlignMove core::sequence::Cell::type_

private

Referenced by came_from().

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The documentation for this class was generated from the following files:

• src/core/sequence/DP_Matrix.hh
• src/core/sequence/DP_Matrix.cc