core::chemical::VDDistanceMatrix Class Reference

Utility class for VD-indexed matrix. More...

#include <residue_support.hh>

Public Member Functions
	VDDistanceMatrix (MutableResidueType const &res, core::Real default_val)
core::Real &	operator() (VD a, VD b)
core::Real	find_max_over (VD a)
void	floyd_warshall ()

Private Attributes
boost::unordered_map< VD, int >	vd_to_index_
utility::vector1< VD >	index_to_vd_
ObjexxFCL::FArray2D< core::Real >	matrix_

Detailed Description

Utility class for VD-indexed matrix.

Constructor & Destructor Documentation

VDDistanceMatrix()

core::chemical::VDDistanceMatrix::VDDistanceMatrix	(	MutableResidueType const &	res,
		core::Real	default_val
	)

References core::chemical::MutableResidueType::atom_iterators(), index_to_vd_, matrix_, core::chemical::MutableResidueType::natoms(), and vd_to_index_.

Member Function Documentation

find_max_over()

core::Real core::chemical::VDDistanceMatrix::find_max_over

(

VD

a

)

References core::pose::motif::a(), index_to_vd_, matrix_, and vd_to_index_.

Referenced by core::chemical::find_nbr_dist().

floyd_warshall()

void core::chemical::VDDistanceMatrix::floyd_warshall

(

)

References index_to_vd_, and matrix_.

Referenced by core::chemical::calculate_rigid_matrix().

operator()()

core::Real & core::chemical::VDDistanceMatrix::operator()	(	VD	a,
		VD	b
	)

References core::pose::motif::a(), protocols::match::upstream::b, matrix_, and vd_to_index_.

Member Data Documentation

index_to_vd_

utility::vector1< VD > core::chemical::VDDistanceMatrix::index_to_vd_

private

Referenced by find_max_over(), floyd_warshall(), and VDDistanceMatrix().

matrix_

ObjexxFCL::FArray2D< core::Real > core::chemical::VDDistanceMatrix::matrix_

private

Referenced by find_max_over(), floyd_warshall(), operator()(), and VDDistanceMatrix().

vd_to_index_

boost::unordered_map< VD, int > core::chemical::VDDistanceMatrix::vd_to_index_

private

Referenced by find_max_over(), operator()(), and VDDistanceMatrix().

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The documentation for this class was generated from the following files:

• src/core/chemical/residue_support.hh
• src/core/chemical/residue_support.cc