Rosetta: core::scoring::TwelveANeighborGraph Class Reference

Rosetta

#include <TwelveANeighborGraph.hh>

Inheritance diagram for core::scoring::TwelveANeighborGraph:

Inheritance graph

[legend]

Public Types
typedef ContextGraph	parent

Public Types inherited from core::scoring::ContextGraph
typedef utility::graph::Graph	parent

Public Member Functions
	~TwelveANeighborGraph () override

	TwelveANeighborGraph ()

	TwelveANeighborGraph (Size num_nodes)

	TwelveANeighborGraph (TwelveANeighborGraph const &source)

TwelveANeighborGraph &	operator= (TwelveANeighborGraph const &source)

Distance	neighbor_cutoff () const override

void	conditionally_add_edge (Size lower_node_id, Size upper_node_id, DistanceSquared dsq) override

ContextGraphOP	clone () const override

void	update_from_pose (pose::Pose const &pose) override

void	delete_edge (utility::graph::Edge *edge) override

Public Member Functions inherited from core::scoring::ContextGraph
	ContextGraph ()

	ContextGraph (Size num_nodes)

	ContextGraph (ContextGraph const &source)=delete

ContextGraph &	operator= (ContextGraph const &)=default

Protected Member Functions
Size	count_static_memory () const override

Size	count_dynamic_memory () const override

utility::graph::Node *	create_new_node (Size node_index) override

utility::graph::Edge *	create_new_edge (Size index1, Size index2) override

utility::graph::Edge *	create_new_edge (utility::graph::Edge const *example_edge) override

Protected Member Functions inherited from core::scoring::ContextGraph
Size	count_dynamic_memory () const override

Static Private Attributes
static Distance const	twelveA_

static DistanceSquared const	twelveA_squared_

Member Typedef Documentation

◆ parent

typedef ContextGraph core::scoring::TwelveANeighborGraph::parent

Constructor & Destructor Documentation

◆ ~TwelveANeighborGraph()

core::scoring::TwelveANeighborGraph::~TwelveANeighborGraph ( )

override

◆ TwelveANeighborGraph() [1/3]

core::scoring::TwelveANeighborGraph::TwelveANeighborGraph ( )

Referenced by count_static_memory().

◆ TwelveANeighborGraph() [2/3]

core::scoring::TwelveANeighborGraph::TwelveANeighborGraph ( Size num_nodes )

◆ TwelveANeighborGraph() [3/3]

core::scoring::TwelveANeighborGraph::TwelveANeighborGraph ( TwelveANeighborGraph const & source )

References operator=().

Member Function Documentation

◆ clone()

ContextGraphOP core::scoring::TwelveANeighborGraph::clone ( ) const

overridevirtual

Implements core::scoring::ContextGraph.

◆ conditionally_add_edge()

void core::scoring::TwelveANeighborGraph::conditionally_add_edge	(	Size	lower_node_id,
		Size	upper_node_id,
		DistanceSquared	dsq
	)

overridevirtual

Implements core::scoring::ContextGraph.

References twelveA_squared_.

◆ count_dynamic_memory()

Size core::scoring::TwelveANeighborGraph::count_dynamic_memory ( ) const

overrideprotected

References core::scoring::ContextGraph::count_dynamic_memory().

◆ count_static_memory()

Size core::scoring::TwelveANeighborGraph::count_static_memory ( ) const

overrideprotectedvirtual

Implements core::scoring::ContextGraph.

References TwelveANeighborGraph().

◆ create_new_edge() [1/2]

utility::graph::Edge * core::scoring::TwelveANeighborGraph::create_new_edge	(	Size	index1,
		Size	index2
	)

overrideprotected

◆ create_new_edge() [2/2]

utility::graph::Edge * core::scoring::TwelveANeighborGraph::create_new_edge ( utility::graph::Edge const * example_edge )

overrideprotected

◆ create_new_node()

utility::graph::Node * core::scoring::TwelveANeighborGraph::create_new_node ( Size node_index )

overrideprotected

◆ delete_edge()

void core::scoring::TwelveANeighborGraph::delete_edge ( utility::graph::Edge * edge )

override

◆ neighbor_cutoff()

Distance core::scoring::TwelveANeighborGraph::neighbor_cutoff ( ) const

overridevirtual

Implements core::scoring::ContextGraph.

References twelveA_.

◆ operator=()

TwelveANeighborGraph & core::scoring::TwelveANeighborGraph::operator= ( TwelveANeighborGraph const & source )

References core::scoring::ContextGraph::operator=().

Referenced by TwelveANeighborGraph().

◆ update_from_pose()

void core::scoring::TwelveANeighborGraph::update_from_pose ( pose::Pose const & pose )

overridevirtual

Implements core::scoring::ContextGraph.

Member Data Documentation

◆ twelveA_

Distance const core::scoring::TwelveANeighborGraph::twelveA_

staticprivate

– 12 A between nbr_atoms, + 6.12 A to the tip of arginine

Referenced by neighbor_cutoff().

◆ twelveA_squared_

DistanceSquared const core::scoring::TwelveANeighborGraph::twelveA_squared_

staticprivate

Referenced by conditionally_add_edge().

The documentation for this class was generated from the following files:

src/core/scoring/TwelveANeighborGraph.hh
src/core/scoring/TwelveANeighborGraph.cc