protocols::frags::FragLib Class Reference

#include <TorsionFragment.hh>

Inheritance diagram for protocols::frags::FragLib:

Public Types
typedef core::Real	Real
typedef core::Size	Size
typedef std::map< core::Size, TorsionFragmentLibraryOP >	FragMap

Public Member Functions
	FragLib (FragMap const &frag_map)
	FragLib ()
	FragLib (FragLib const &src)
TorsionFragmentLibrary const &	library (core::Size const size) const
TorsionFragmentLibrary &	library (core::Size const size)
utility::vector1< core::Size >	frag_sizes () const
	slow More...
void	clear ()
void	delete_residue (core::Size const seqpos)
void	shift (int const current2desired_offset)
void	copy_fragments (FragLib const &src)

Private Attributes
FragMap	frag_map_

Member Typedef Documentation

FragMap

typedef std::map< core::Size, TorsionFragmentLibraryOP > protocols::frags::FragLib::FragMap

Real

typedef core::Real protocols::frags::FragLib::Real

Size

typedef core::Size protocols::frags::FragLib::Size

Constructor & Destructor Documentation

FragLib() [1/3]

protocols::frags::FragLib::FragLib ( FragMap const &  frag_map )

inline

FragLib() [2/3]

protocols::frags::FragLib::FragLib ( )

inline

FragLib() [3/3]

protocols::frags::FragLib::FragLib ( FragLib const &  src )

inline

References copy_fragments().

Member Function Documentation

clear()

void protocols::frags::FragLib::clear ( )

inline

References frag_map_.

Referenced by protocols::frags::operator>>().

copy_fragments()

void protocols::frags::FragLib::copy_fragments

(

FragLib const &

src

)

References protocols::frags::TorsionFragmentLibrary::copy_fragments(), frag_sizes(), and library().

Referenced by FragLib().

delete_residue()

void protocols::frags::FragLib::delete_residue

(

core::Size const

seqpos

)

References frag_map_.

frag_sizes()

utility::vector1< core::Size > protocols::frags::FragLib::frag_sizes

(

)

const

slow

References frag_map_.

Referenced by copy_fragments(), protocols::frags::fill_in_gaps(), protocols::frags::insert_random_fragments_in_flexible_protein_regions(), and protocols::frags::operator<<().

library() [1/2]

TorsionFragmentLibrary & protocols::frags::FragLib::library

(

core::Size const

size

)

References frag_map_, and protocols::frags::TR().

library() [2/2]

TorsionFragmentLibrary const & protocols::frags::FragLib::library

(

core::Size const

size

)

const

References frag_map_.

Referenced by protocols::frags::add_vall_cheating_fragments(), protocols::frags::add_vall_fragments(), copy_fragments(), protocols::frags::fill_in_gaps(), protocols::frags::insert_random_fragments_in_flexible_protein_regions(), protocols::frags::operator<<(), and protocols::frags::operator>>().

shift()

void protocols::frags::FragLib::shift

(

int const

current2desired_offset

)

References frag_map_.

Member Data Documentation

frag_map_

FragMap protocols::frags::FragLib::frag_map_

private

Referenced by clear(), delete_residue(), frag_sizes(), library(), and shift().

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The documentation for this class was generated from the following files:

• src/protocols/frags/TorsionFragment.hh
• src/protocols/frags/TorsionFragment.cc