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protocols::drug_design::ReactionFragment Member List

This is the complete list of members for protocols::drug_design::ReactionFragment, including all inherited members.

add_reaction(::RDKit::ChemicalReactionOP rxn, core::Real weight) overrideprotocols::drug_design::ReactionFragmentvirtual
apply(core::chemical::MutableResidueType &) overrideprotocols::drug_design::ReactionFragmentvirtual
protocols::chemistries::Chemistry::apply(core::chemical::MutableResidueType &restype, core::pose::Pose const &)protocols::chemistries::Chemistryinlinevirtual
Chemistry(std::string const &name)protocols::chemistries::Chemistryinline
ChemistryBase(std::string const &name)core::chemical::modifications::ChemistryBaseinline
class_name()protocols::drug_design::ReactionFragmentstatic
cleanup_product(::RDKit::RWMol &prod) constprotocols::drug_design::ReactionChemistryprotected
filter_reactions(::RDKit::ROMol const &rdmol, utility::vector1< ::RDKit::ChemicalReactionOP > &rxns, numeric::random::WeightedSampler &rxn_sampler) constprotocols::drug_design::ReactionChemistryprotected
get_additional_output()core::chemical::modifications::ChemistryBaseinlinevirtual
get_last_status() constcore::chemical::modifications::ChemistryBaseinline
get_mapping() const overrideprotocols::drug_design::ReactionFragmentvirtual
get_reactions() constprotocols::drug_design::ReactionChemistryprotected
has_additional_output() constcore::chemical::modifications::ChemistryBaseinlinevirtual
keep_atom(std::string const &keep_atom)protocols::drug_design::ReactionFragment
keep_atom() constprotocols::drug_design::ReactionFragmentinline
keep_atom_protocols::drug_design::ReactionFragmentprivate
keep_bigger(bool setting)protocols::drug_design::ReactionFragmentinline
keep_bigger() constprotocols::drug_design::ReactionFragmentinline
keep_bigger_protocols::drug_design::ReactionFragmentprivate
keep_random(bool setting)protocols::drug_design::ReactionFragmentinline
keep_random() constprotocols::drug_design::ReactionFragmentinline
keep_random_protocols::drug_design::ReactionFragmentprivate
last_status_core::chemical::modifications::ChemistryBaseprivate
mapping_protocols::drug_design::ReactionFragmentprivate
name() constcore::chemical::modifications::ChemistryBaseinline
name_core::chemical::modifications::ChemistryBaseprivate
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &datacache) overrideprotocols::drug_design::ReactionFragmentvirtual
prefilter_reactions(utility::vector1< ::RDKit::ROMolOP > const &reactants, bool exclude_first=true)protocols::drug_design::ReactionChemistry
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::drug_design::ReactionFragmentstatic
reaction_file(std::string filename, bool append=false)protocols::drug_design::ReactionChemistryvirtual
ReactionChemistry()protocols::drug_design::ReactionChemistryprivate
ReactionChemistry(std::string const &type)protocols::drug_design::ReactionChemistry
ReactionFragment()protocols::drug_design::ReactionFragment
reactions_protocols::drug_design::ReactionChemistryprivate
set_last_status(ChemistryStatus setting)core::chemical::modifications::ChemistryBaseinline
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