| add_output_observer(JobOutputterObserverAP an_observer) | protocols::jd2::Job | |
| add_string(std::string const &string_in) | protocols::jd2::Job | |
| add_string_real_pair(std::string const &string_in, core::Real const real_in) | protocols::jd2::Job | |
| add_string_string_pair(std::string const &string1, std::string const &string2) | protocols::jd2::Job | |
| add_strings(Strings const &) | protocols::jd2::Job | |
| bad() const | protocols::jd2::Job | |
| bb_ids_ | protocols::make_rot_lib::MakeRotLibJob | private |
| bbs_ | protocols::make_rot_lib::MakeRotLibJob | private |
| call_output_observers(core::pose::Pose const &pose) | protocols::jd2::Job | |
| can_be_deleted() const | protocols::jd2::Job | inline |
| can_be_deleted_ | protocols::jd2::Job | private |
| clear_output() | protocols::jd2::Job | |
| clone() const | protocols::jd2::Job | |
| completed() const | protocols::jd2::Job | inline |
| completed_ | protocols::jd2::Job | private |
| copy_without_output() const | protocols::jd2::Job | |
| elapsed_time() const | protocols::jd2::Job | |
| end_time() const | protocols::jd2::Job | |
| end_time_ | protocols::jd2::Job | private |
| end_timing() | protocols::jd2::Job | |
| eps_ | protocols::make_rot_lib::MakeRotLibJob | private |
| get_bb(core::Size i) const | protocols::make_rot_lib::MakeRotLibJob | inline |
| get_bb_ids() const | protocols::make_rot_lib::MakeRotLibJob | inline |
| get_bbs() const | protocols::make_rot_lib::MakeRotLibJob | inline |
| get_eps() const | protocols::make_rot_lib::MakeRotLibJob | inline |
| get_omg() const | protocols::make_rot_lib::MakeRotLibJob | inline |
| get_options_data() const | protocols::make_rot_lib::MakeRotLibJob | inline |
| get_pose() const | protocols::jd2::Job | |
| get_pose(core::pose::Pose &) const | protocols::jd2::Job | |
| get_semirotameric() const | protocols::make_rot_lib::MakeRotLibJob | inline |
| get_string_real_pairs() | protocols::jd2::Job | inline |
| get_string_real_pairs() const | protocols::jd2::Job | inline |
| get_string_string_pairs() | protocols::jd2::Job | inline |
| get_string_string_pairs() const | protocols::jd2::Job | inline |
| get_strings() | protocols::jd2::Job | inline |
| get_strings() const | protocols::jd2::Job | inline |
| inner_job() const | protocols::jd2::Job | |
| inner_job_ | protocols::jd2::Job | private |
| inner_job_nonconst() | protocols::jd2::Job | |
| input_tag() const | protocols::jd2::Job | |
| Job(InnerJobOP inner_job, core::Size nstruct_index) | protocols::jd2::Job | |
| Job(Job const &src) | protocols::jd2::Job | |
| JobOutputterObservers typedef | protocols::jd2::Job | private |
| long_strings_ | protocols::jd2::Job | private |
| MakeRotLibJob(jd2::InnerJobOP inner_job, core::Size nstruct_index, core::Real omg, utility::vector1< core::Real > const &bbs, utility::vector1< core::Size > const &bb_ids, core::Real eps, MakeRotLibOptionsDataOP mrlod, bool semirotameric) | protocols::make_rot_lib::MakeRotLibJob | |
| mrlod_ | protocols::make_rot_lib::MakeRotLibJob | private |
| nstruct_index() const | protocols::jd2::Job | |
| nstruct_index_ | protocols::jd2::Job | private |
| nstruct_max() const | protocols::jd2::Job | |
| omg_ | protocols::make_rot_lib::MakeRotLibJob | private |
| output_observers_ | protocols::jd2::Job | private |
| output_string_real_pairs_begin() const | protocols::jd2::Job | |
| output_string_real_pairs_end() const | protocols::jd2::Job | |
| output_string_string_pairs_begin() const | protocols::jd2::Job | |
| output_string_string_pairs_end() const | protocols::jd2::Job | |
| output_strings_begin() const | protocols::jd2::Job | |
| output_strings_end() const | protocols::jd2::Job | |
| remove_output_observer(JobOutputterObserverAP old_observer) | protocols::jd2::Job | |
| semirotameric_ | protocols::make_rot_lib::MakeRotLibJob | private |
| set_bad(bool value=true) | protocols::jd2::Job | |
| set_can_be_deleted(bool value=true) | protocols::jd2::Job | inline |
| set_completed(bool value=true) | protocols::jd2::Job | inline |
| set_status_prefix(std::string prefix) | protocols::jd2::Job | inline |
| show(std::ostream &out) const | protocols::jd2::Job | virtual |
| start_time() const | protocols::jd2::Job | |
| start_time_ | protocols::jd2::Job | private |
| start_timing() | protocols::jd2::Job | |
| status_prefix() const | protocols::jd2::Job | inline |
| status_prefix_ | protocols::jd2::Job | private |
| string_real_pairs_ | protocols::jd2::Job | private |
| string_string_pairs_ | protocols::jd2::Job | private |
| StringRealPairs typedef | protocols::jd2::Job | |
| Strings typedef | protocols::jd2::Job | |
| StringStringPairs typedef | protocols::jd2::Job | |
| timestamp() const | protocols::jd2::Job | |
| timestamp_ | protocols::jd2::Job | private |
| to_do() const | protocols::jd2::Job | inline |
| ~Job() override | protocols::jd2::Job | |
| ~MakeRotLibJob() override=default | protocols::make_rot_lib::MakeRotLibJob | |
