protocols::pack_daemon::TopEntitySet Class Reference

#include <MultistateFitnessFunction.hh>

Inheritance diagram for protocols::pack_daemon::TopEntitySet:

Public Types
typedef protocols::genetic_algorithm::Entity	Entity
typedef protocols::genetic_algorithm::EntityOP	EntityOP
typedef utility::vector1< core::Real >	StateEnergies
typedef std::pair< StateEnergies, StateEnergies >	StateEnergiesAndNPDs
typedef std::pair< EntityOP, StateEnergiesAndNPDs >	EntityAndScore
typedef utility::vector1< EntityAndScore >	EntityHistory

Public Member Functions
	TopEntitySet ()
core::Size	size () const
EntityAndScore const &	operator[] (core::Size index) const
EntityAndScore &	operator[] (core::Size index)
void	desired_entity_history_size (core::Size setting)
core::Size	desired_entity_history_size () const
void	clear ()
std::list< genetic_algorithm::EntityOP >	update_entity_history (Entity const &ent, StateEnergiesAndNPDs const &seanpds, bool &added_new_entity)
	Update the internal history after receiving a new entity; returns the list of entities that are to be discarded. The boolean added_new_entity is set to true if the given entity was added to the the list of top entities. More...
core::Size	index_of_entity (Entity const &ent) const
EntityAndScore	pop ()
	remove the worst entity from the set and return it More...

Private Attributes
core::Size	desired_entity_history_size_
core::Size	n_tied_for_worst_
EntityHistory	top_entities_

Member Typedef Documentation

Entity

typedef protocols::genetic_algorithm::Entity protocols::pack_daemon::TopEntitySet::Entity

EntityAndScore

typedef std::pair< EntityOP, StateEnergiesAndNPDs > protocols::pack_daemon::TopEntitySet::EntityAndScore

EntityHistory

typedef utility::vector1< EntityAndScore > protocols::pack_daemon::TopEntitySet::EntityHistory

EntityOP

typedef protocols::genetic_algorithm::EntityOP protocols::pack_daemon::TopEntitySet::EntityOP

StateEnergies

typedef utility::vector1< core::Real > protocols::pack_daemon::TopEntitySet::StateEnergies

StateEnergiesAndNPDs

typedef std::pair< StateEnergies, StateEnergies > protocols::pack_daemon::TopEntitySet::StateEnergiesAndNPDs

Constructor & Destructor Documentation

TopEntitySet()

protocols::pack_daemon::TopEntitySet::TopEntitySet

(

)

Member Function Documentation

clear()

void protocols::pack_daemon::TopEntitySet::clear

(

)

References n_tied_for_worst_, and top_entities_.

Referenced by protocols::pack_daemon::MultistateFitnessFunction::clear_history().

desired_entity_history_size() [1/2]

core::Size protocols::pack_daemon::TopEntitySet::desired_entity_history_size

(

)

const

References desired_entity_history_size_.

desired_entity_history_size() [2/2]

void protocols::pack_daemon::TopEntitySet::desired_entity_history_size

(

core::Size

setting

)

References desired_entity_history_size_, n_tied_for_worst_, and top_entities_.

Referenced by protocols::pack_daemon::MultistateFitnessFunction::set_history_size().

index_of_entity()

core::Size protocols::pack_daemon::TopEntitySet::index_of_entity

(

Entity const &

ent

)

const

References top_entities_.

Referenced by protocols::pack_daemon::MultistateFitnessFunction::recover_relevant_poses_for_entity().

operator[]() [1/2]

TopEntitySet::EntityAndScore & protocols::pack_daemon::TopEntitySet::operator[]

(

core::Size

index

)

References top_entities_.

operator[]() [2/2]

TopEntitySet::EntityAndScore const & protocols::pack_daemon::TopEntitySet::operator[]

(

core::Size

index

)

const

References top_entities_.

pop()

TopEntitySet::EntityAndScore protocols::pack_daemon::TopEntitySet::pop

(

)

remove the worst entity from the set and return it

References top_entities_.

size()

core::Size protocols::pack_daemon::TopEntitySet::size

(

)

const

References top_entities_.

Referenced by protocols::pack_daemon::MultistateFitnessFunction::recover_relevant_poses_for_entity().

update_entity_history()

std::list< TopEntitySet::EntityOP > protocols::pack_daemon::TopEntitySet::update_entity_history	(	Entity const &	ent,
		StateEnergiesAndNPDs const &	seanpds,
		bool &	added_new_entity
	)

Update the internal history after receiving a new entity; returns the list of entities that are to be discarded. The boolean added_new_entity is set to true if the given entity was added to the the list of top entities.

References desired_entity_history_size_, protocols::genetic_algorithm::Entity::fitness(), n_tied_for_worst_, and top_entities_.

Referenced by protocols::pack_daemon::MultistateFitnessFunction::update_entity_history().

Member Data Documentation

desired_entity_history_size_

core::Size protocols::pack_daemon::TopEntitySet::desired_entity_history_size_

private

Referenced by desired_entity_history_size(), and update_entity_history().

n_tied_for_worst_

core::Size protocols::pack_daemon::TopEntitySet::n_tied_for_worst_

private

Referenced by clear(), desired_entity_history_size(), and update_entity_history().

top_entities_

EntityHistory protocols::pack_daemon::TopEntitySet::top_entities_

private

Referenced by clear(), desired_entity_history_size(), index_of_entity(), operator[](), pop(), size(), and update_entity_history().

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The documentation for this class was generated from the following files:

• src/protocols/pack_daemon/MultistateFitnessFunction.hh
• src/protocols/pack_daemon/MultistateFitnessFunction.cc