core::import_pose::libraries::BasePairStepLibrary Class Reference

#include <BasePairStepLibrary.hh>

Inheritance diagram for core::import_pose::libraries::BasePairStepLibrary:

Public Member Functions
	BasePairStepLibrary (bool const canonical=true)
	~BasePairStepLibrary () override
bool	has_value (BasePairStepSequence const &base_pair_step_sequence) const
utility::vector1< core::pose::MiniPoseOP > const &	mini_pose_list (BasePairStepSequence const &base_pair_step_sequence) const
core::pose::PoseCOP const &	scratch_pose (BasePairStepSequence const &base_pair_step_sequence) const
bool	canonical () const
std::string	database_dir () const

Private Member Functions
void	initialize ()
void	initialize_data (BasePairStepSequence const &base_pair_step_sequence, bool const load_in_poses=true) const

Private Attributes
bool const	canonical_
std::map< BasePairStepSequence, utility::vector1< core::pose::MiniPoseOP > >	mini_pose_lists_
std::map< BasePairStepSequence, core::pose::PoseCOP >	scratch_poses_

Constructor & Destructor Documentation

BasePairStepLibrary()

core::import_pose::libraries::BasePairStepLibrary::BasePairStepLibrary

(

bool const

canonical = true

)

References initialize().

~BasePairStepLibrary()

core::import_pose::libraries::BasePairStepLibrary::~BasePairStepLibrary ( )

overridedefault

Member Function Documentation

canonical()

bool core::import_pose::libraries::BasePairStepLibrary::canonical ( ) const

inline

References canonical_.

Referenced by core::import_pose::libraries::check_base_pair_step_availability().

database_dir()

std::string core::import_pose::libraries::BasePairStepLibrary::database_dir

(

)

const

References canonical_.

Referenced by core::import_pose::libraries::check_base_pair_step_availability(), and initialize_data().

has_value()

bool core::import_pose::libraries::BasePairStepLibrary::has_value

(

BasePairStepSequence const &

base_pair_step_sequence

)

const

References mini_pose_lists_.

Referenced by core::import_pose::libraries::check_base_pair_step_availability(), initialize_data(), mini_pose_list(), and scratch_pose().

initialize()

void core::import_pose::libraries::BasePairStepLibrary::initialize ( )

private

References canonical_, initialize_data(), core::import_pose::MAX_BULGE_LENGTH(), core::chemical::rings::q, and core::chemical::rna::rna_nts().

Referenced by BasePairStepLibrary().

initialize_data()

void core::import_pose::libraries::BasePairStepLibrary::initialize_data ( BasePairStepSequence const &  base_pair_step_sequence, bool const  load_in_poses = true  ) const

private

References database_dir(), has_value(), update_ResidueType_enum_files::input_file, core::kinematics::FoldTree::is_cutpoint(), mini_pose_list(), mini_pose_lists_, core::import_pose::libraries::BasePairStepSequence::num_bulge(), core::import_pose::process_input_file(), scratch_poses_, core::import_pose::libraries::BasePairStepSequence::subdir(), core::import_pose::libraries::BasePairStepSequence::tag(), core::pose::tag_from_pose(), and core::import_pose::TR().

Referenced by initialize(), mini_pose_list(), and scratch_pose().

mini_pose_list()

utility::vector1< core::pose::MiniPoseOP > const & core::import_pose::libraries::BasePairStepLibrary::mini_pose_list

(

BasePairStepSequence const &

base_pair_step_sequence

)

const

References has_value(), initialize_data(), and mini_pose_lists_.

Referenced by initialize_data(), and core::import_pose::libraries::RNA_ChunkLibrary::setup_base_pair_step_chunks().

scratch_pose()

pose::PoseCOP const & core::import_pose::libraries::BasePairStepLibrary::scratch_pose

(

BasePairStepSequence const &

base_pair_step_sequence

)

const

References has_value(), initialize_data(), and scratch_poses_.

Referenced by core::import_pose::libraries::RNA_ChunkLibrary::setup_base_pair_step_chunks().

Member Data Documentation

canonical_

bool const core::import_pose::libraries::BasePairStepLibrary::canonical_

private

Referenced by canonical(), database_dir(), and initialize().

mini_pose_lists_

std::map< BasePairStepSequence, utility::vector1< core::pose::MiniPoseOP > > core::import_pose::libraries::BasePairStepLibrary::mini_pose_lists_

mutableprivate

Referenced by has_value(), initialize_data(), and mini_pose_list().

scratch_poses_

std::map< BasePairStepSequence, core::pose::PoseCOP > core::import_pose::libraries::BasePairStepLibrary::scratch_poses_

mutableprivate

Referenced by initialize_data(), and scratch_pose().

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The documentation for this class was generated from the following files:

• src/core/import_pose/libraries/BasePairStepLibrary.hh
• src/core/import_pose/libraries/BasePairStepLibrary.cc