| ::LoopModelerTests class | protocols::loop_modeler::LoopModeler | friend |
| add_child(ChildSubclassOP child) | protocols::loop_modeling::LoopMover | inlineprotected |
| apply(Pose &pose) override | protocols::loop_modeling::LoopMover | virtual |
| build_stage() | protocols::loop_modeler::LoopModeler | |
| build_stage_ | protocols::loop_modeler::LoopModeler | private |
| centroid_stage() | protocols::loop_modeler::LoopModeler | |
| centroid_stage_ | protocols::loop_modeler::LoopModeler | private |
| children_ | protocols::loop_modeling::LoopMover | private |
| clear_children() | protocols::loop_modeling::LoopMover | protected |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::loop_modeler::LoopModeler | virtual |
| count_children() const | protocols::loop_modeling::LoopMover | protected |
| create() | protocols::moves::Mover | virtual |
| current_job_ | protocols::moves::Mover | private |
| current_tag_ | protocols::moves::Mover | private |
| define_composition_schema(utility::tag::XMLSchemaDefinition &xsd, utility::tag::XMLSchemaComplexTypeGenerator &ct_gen, utility::tag::XMLSchemaSimpleSubelementList &subelements) | protocols::loop_modeling::LoopMover | static |
| disable_build_stage() | protocols::loop_modeler::LoopModeler | |
| disable_centroid_stage() | protocols::loop_modeler::LoopModeler | |
| disable_fullatom_stage() | protocols::loop_modeler::LoopModeler | |
| do_apply(Pose &pose) override | protocols::loop_modeler::LoopModeler | protectedvirtual |
| protocols::loop_modeling::LoopMover::do_apply(Pose &pose, Loop const &loop) | protocols::loop_modeling::LoopMover | protectedvirtual |
| enable_build_stage() | protocols::loop_modeler::LoopModeler | |
| enable_centroid_stage() | protocols::loop_modeler::LoopModeler | |
| enable_fullatom_stage() | protocols::loop_modeler::LoopModeler | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| fullatom_stage() | protocols::loop_modeler::LoopModeler | |
| fullatom_stage_ | protocols::loop_modeler::LoopModeler | private |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_children() const | protocols::loop_modeling::LoopMover | protected |
| get_children_names(utility::vector1< std::string > &names, std::string indent="") const | protocols::loop_modeling::LoopMover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_default_task_factory(core::pose::Pose &pose) | protocols::loop_modeler::LoopModeler | |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_loop(core::Size index) const | protocols::loop_modeling::LoopMover | |
| get_loops() | protocols::loop_modeling::LoopMover | |
| get_loops() const | protocols::loop_modeling::LoopMover | |
| get_name() const override | protocols::loop_modeler::LoopModeler | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_task_factory() | protocols::loop_modeler::LoopModeler | |
| get_task_factory(core::pack::task::TaskFactoryOP fallback) | protocols::loop_modeler::LoopModeler | |
| get_tool(std::string key) const | protocols::loop_modeling::LoopMover | inline |
| get_tool(std::string key, ToolTypeOP fallback) const | protocols::loop_modeling::LoopMover | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| info_ | protocols::moves::Mover | private |
| input_pose_ | protocols::moves::Mover | private |
| is_build_stage_enabled_ | protocols::loop_modeler::LoopModeler | private |
| is_centroid_stage_enabled_ | protocols::loop_modeler::LoopModeler | private |
| is_fullatom_stage_enabled_ | protocols::loop_modeler::LoopModeler | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| last_status_ | protocols::moves::Mover | private |
| LoopModeler() | protocols::loop_modeler::LoopModeler | |
| LoopMover() | protocols::loop_modeling::LoopMover | |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::loop_modeler::LoopModeler | static |
| name() | protocols::moves::Mover | inlinestatic |
| native_pose_ | protocols::moves::Mover | private |
| parent_name_ | protocols::loop_modeling::LoopMover | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::loop_modeler::LoopModeler | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| prepare_for_centroid_ | protocols::loop_modeler::LoopModeler | private |
| prepare_for_fullatom_ | protocols::loop_modeler::LoopModeler | private |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::loop_modeler::LoopModeler | static |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| remove_child(LoopMoverOP child) | protocols::loop_modeling::LoopMover | protected |
| request_fold_tree() const | protocols::loop_modeling::LoopMover | virtual |
| reset_status() | protocols::moves::Mover | |
| set_cen_scorefxn(core::scoring::ScoreFunctionOP scorefxn) | protocols::loop_modeler::LoopModeler | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_fa_scorefxn(core::scoring::ScoreFunctionOP scorefxn) | protocols::loop_modeler::LoopModeler | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_loop(Loop const &loop) | protocols::loop_modeling::LoopMover | |
| set_loops(LoopsOP loops) | protocols::loop_modeling::LoopMover | |
| set_loops(Loops const &loops) | protocols::loop_modeling::LoopMover | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_task_factory(core::pack::task::TaskFactoryOP task_factory) | protocols::loop_modeler::LoopModeler | |
| set_tool(std::string key, ToolTypeOP value) | protocols::loop_modeling::LoopMover | inline |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| setup_empty_config() | protocols::loop_modeler::LoopModeler | |
| setup_fold_tree(Pose &pose, LoopsCOP loops, FoldTreeRequest request) | protocols::loop_modeling::LoopMover | static |
| setup_kic_config() | protocols::loop_modeler::LoopModeler | |
| setup_kic_with_fragments_config() | protocols::loop_modeler::LoopModeler | |
| setup_loophash_kic_config(bool perturb_sequence, std::string seqposes_no_mutate_str) | protocols::loop_modeler::LoopModeler | |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| toolbox_ | protocols::loop_modeling::LoopMover | private |
| trust_fold_tree() | protocols::loop_modeling::LoopMover | |
| trust_fold_tree_ | protocols::loop_modeling::LoopMover | private |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| type_ | protocols::moves::Mover | private |
| use_default_task_factory_ | protocols::loop_modeler::LoopModeler | private |
| was_successful() const | protocols::loop_modeling::LoopMover | |
| was_successful(bool value) | protocols::loop_modeling::LoopMover | inline |
| was_successful_ | protocols::loop_modeling::LoopMover | private |
| ~LoopModeler() override | protocols::loop_modeler::LoopModeler | |
