#include <EnzdesJobInputter.hh>

Inheritance diagram for protocols::enzdes::EnzdesJobInputter:

[legend]

Public Member Functions
	EnzdesJobInputter ()

	~EnzdesJobInputter () override

void	pose_from_job (core::pose::Pose &pose, protocols::jd2::JobOP job) override
	this function is responsible for filling the pose reference with the pose indicated by the job. The Job object (within its InnerJob) contains a PoseCOP. This function needs to either fill the pose reference from the InnerJob or, on first demand of a pose from that InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill the reference. This implementation uses pose_from_pdb More...

Public Member Functions inherited from protocols::jd2::PDBJobInputter
	PDBJobInputter ()

	~PDBJobInputter () override

void	pose_from_job (core::pose::Pose &pose, JobOP job) override
	this function is responsible for filling the pose reference with the pose indicated by the job. The Job object (within its InnerJob) contains a PoseCOP. This function needs to either fill the pose reference from the InnerJob or, on first demand of a pose from that InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill the reference. This implementation uses pose_from_pdb More...

void	fill_jobs (JobsContainer &jobs) override
	this function determines what jobs exist from -s/-l More...

JobInputterInputSource::Enum	input_source () const override
	Return the type of input source that the PDBJobInputter is currently using. More...

Public Member Functions inherited from protocols::jd2::JobInputter
	~JobInputter () override

JobInputterCOP	get_self_ptr () const
	Get self const owning pointers. More...

JobInputterOP	get_self_ptr ()
	Get self owning pointers. More...

JobInputterCAP	get_self_weak_ptr () const
	Get self const weak pointers. More...

JobInputterAP	get_self_weak_ptr ()
	Get self weak pointers. More...

virtual void	update_jobs_list (JobsContainerOP jobs)
	This function is only called by certain JobInputters to update the jobs list after it has already been created. More...

virtual bool	updates_jobs_list () const
	Does this type of JobInputter update the jobs list? More...

Private Attributes
protocols::toolbox::match_enzdes_util::EnzdesLoopsFileOP	enz_loops_file_

Additional Inherited Members
Static Public Member Functions inherited from protocols::jd2::JobInputter
static std::string	job_inputter_input_source_to_string (JobInputterInputSource::Enum source)
	call this with input_source() to get the input source of a particular job inputter More...

Protected Member Functions inherited from protocols::jd2::JobInputter
void	load_pose_into_job (core::pose::Pose const &pose, JobOP job)
	this function modifies the InnerJob's pose. Access to that pose is via friendship. More...

void	load_pose_into_job (core::pose::PoseCOP pose, JobOP job)
	this function modifies the InnerJob's pose. Access to that pose is via friendship. More...

virtual core::Size	get_nstruct () const
	this code is here to restrict the use of inner_job_nonconst (this class is a friend class and can do it) More...

Constructor & Destructor Documentation

◆ EnzdesJobInputter()

protocols::enzdes::EnzdesJobInputter::EnzdesJobInputter ( )

References enz_loops_file_, and protocols::enzdes::TR().

◆ ~EnzdesJobInputter()

protocols::enzdes::EnzdesJobInputter::~EnzdesJobInputter ( )

overridedefault

Member Function Documentation

◆ pose_from_job()

void protocols::enzdes::EnzdesJobInputter::pose_from_job	(	core::pose::Pose &	pose,
		protocols::jd2::JobOP	job
	)

overridevirtual

this function is responsible for filling the pose reference with the pose indicated by the job. The Job object (within its InnerJob) contains a PoseCOP. This function needs to either fill the pose reference from the InnerJob or, on first demand of a pose from that InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill the reference. This implementation uses pose_from_pdb

Implements protocols::jd2::JobInputter.

References enz_loops_file_, protocols::toolbox::match_enzdes_util::get_enzdes_observer(), protocols::jd2::JobInputter::load_pose_into_job(), core::pose::Pose::observer_cache(), protocols::enzdes::enzutil::read_pose_from_file(), core::pose::datacache::ObserverCache::set(), core::pose::datacache::SPECIAL_SEGMENTS_OBSERVER, and protocols::enzdes::TR().

Member Data Documentation

◆ enz_loops_file_

protocols::toolbox::match_enzdes_util::EnzdesLoopsFileOP protocols::enzdes::EnzdesJobInputter::enz_loops_file_

private

Referenced by EnzdesJobInputter(), and pose_from_job().

The documentation for this class was generated from the following files:

src/protocols/enzdes/EnzdesJobInputter.hh
src/protocols/enzdes/EnzdesJobInputter.cc

Public Member Functions

Private Attributes