core::scoring::SS_Killhairpins_Info Class Reference

#include <SS_Killhairpins_Info.hh>

Inheritance diagram for core::scoring::SS_Killhairpins_Info:

Public Member Functions
	SS_Killhairpins_Info ()
basic::datacache::CacheableDataOP	clone () const override
Hairpins const &	hairpins () const
Hairpins &	hairpins ()
bool	check_hairpin (core::Size const &strand1_res, core::Size const &strand2_res)
void	setup_from_psipred (utility::io::izstream &input_file)
void	setup_from_kill_hairpins_file (utility::io::izstream &input_file)
void	setup_killhairpins ()
bool	kill_parallel () const
bool	kill_antiparallel () const

Private Attributes
bool	kill_parallel_
bool	kill_antiparallel_
Hairpins	hairpins_

Constructor & Destructor Documentation

SS_Killhairpins_Info()

core::scoring::SS_Killhairpins_Info::SS_Killhairpins_Info

(

)

Member Function Documentation

check_hairpin()

bool core::scoring::SS_Killhairpins_Info::check_hairpin	(	core::Size const &	strand1_res,
		core::Size const &	strand2_res
	)

References hairpins_, and core::scoring::Hairpins::list().

Referenced by core::scoring::SecondaryStructurePotential::hairpin_killing_score().

clone()

basic::datacache::CacheableDataOP core::scoring::SS_Killhairpins_Info::clone ( ) const

inlineoverride

hairpins() [1/2]

Hairpins& core::scoring::SS_Killhairpins_Info::hairpins ( )

inline

References hairpins_.

hairpins() [2/2]

Hairpins const& core::scoring::SS_Killhairpins_Info::hairpins ( ) const

inline

References hairpins_.

kill_antiparallel()

bool core::scoring::SS_Killhairpins_Info::kill_antiparallel ( ) const

inline

References kill_antiparallel_.

Referenced by core::scoring::SecondaryStructurePotential::hairpin_killing_score().

kill_parallel()

bool core::scoring::SS_Killhairpins_Info::kill_parallel ( ) const

inline

References kill_parallel_.

Referenced by core::scoring::SecondaryStructurePotential::hairpin_killing_score().

setup_from_kill_hairpins_file()

void core::scoring::SS_Killhairpins_Info::setup_from_kill_hairpins_file

(

utility::io::izstream &

input_file

)

References core::scoring::Hairpins::append_hairpin(), hairpins_, update_ResidueType_enum_files::input_file, and core::scoring::trKillHairpinsIO().

Referenced by setup_killhairpins().

setup_from_psipred()

void core::scoring::SS_Killhairpins_Info::setup_from_psipred

(

utility::io::izstream &

input_file

)

References protocols::cluster::calibur::aa, core::scoring::Hairpins::append_hairpin(), hairpins_, update_ResidueType_enum_files::input_file, kill_parallel_, and core::scoring::trKillHairpinsIO().

Referenced by setup_killhairpins().

setup_killhairpins()

void core::scoring::SS_Killhairpins_Info::setup_killhairpins

(

)

References core::pose::motif::a(), protocols::match::upstream::b, core::scoring::Hairpins::clear(), hairpins_, update_ResidueType_enum_files::input_file, kill_antiparallel_, kill_parallel_, setup_from_kill_hairpins_file(), setup_from_psipred(), and protocols::sparta::split().

Referenced by protocols::abinitio::AbrelaxApplication::fold().

Member Data Documentation

hairpins_

Hairpins core::scoring::SS_Killhairpins_Info::hairpins_

private

Referenced by check_hairpin(), hairpins(), setup_from_kill_hairpins_file(), setup_from_psipred(), and setup_killhairpins().

kill_antiparallel_

bool core::scoring::SS_Killhairpins_Info::kill_antiparallel_

private

Referenced by kill_antiparallel(), and setup_killhairpins().

kill_parallel_

bool core::scoring::SS_Killhairpins_Info::kill_parallel_

private

Referenced by kill_parallel(), setup_from_psipred(), and setup_killhairpins().

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The documentation for this class was generated from the following files:

• src/core/scoring/SS_Killhairpins_Info.hh
• src/core/scoring/SS_Killhairpins_Info.cc