protocols::rotamer_recovery::RRProtocol Class Reference

The protocol to run to compute the rotamer recovery the rotamer recovery test. More...

#include <RRProtocol.hh>

Inheritance diagram for protocols::rotamer_recovery::RRProtocol:

Public Member Functions
	~RRProtocol () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...
virtual std::string	get_name () const =0
virtual std::string	get_parameters () const =0
virtual void	parse_attributes_from_tag (basic::datacache::DataMap const &dm, utility::tag::TagCOP tag)
	As the RRProtocol is being read in. More...
virtual void	run (RRComparerOP comparer, RRReporterOP reporter, core::pose::Pose const &pose, core::scoring::ScoreFunction const &score_function, core::pack::task::PackerTask const &packer_task)=0

Protected Member Functions
bool	measure_rotamer_recovery (RRComparerOP comparer, RRReporterOP reporter, core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::conformation::Residue const &res1, core::conformation::Residue const &res2)

Detailed Description

The protocol to run to compute the rotamer recovery the rotamer recovery test.

Besides implementing the interface given in the base class RRProtocol each RRProtocol should have an entry in the convenience RotamerRecovery constructor so its use can be indicated by name.

Constructor & Destructor Documentation

~RRProtocol()

protocols::rotamer_recovery::RRProtocol::~RRProtocol ( )

overridedefault

Automatically generated virtual destructor for class deriving directly from VirtualBase.

Auto-generated virtual destructor

Member Function Documentation

get_name()

virtual std::string protocols::rotamer_recovery::RRProtocol::get_name ( ) const

pure virtual

Implemented in protocols::rotamer_recovery::RRProtocolRTMin, protocols::rotamer_recovery::RRProtocolRotamerTrials, protocols::rotamer_recovery::RRProtocolRelax, protocols::rotamer_recovery::RRProtocolReferenceStructure, protocols::rotamer_recovery::RRProtocolPackRotamers, protocols::rotamer_recovery::RRProtocolMover, and protocols::rotamer_recovery::RRProtocolMinPack.

get_parameters()

virtual std::string protocols::rotamer_recovery::RRProtocol::get_parameters ( ) const

pure virtual

Implemented in protocols::rotamer_recovery::RRProtocolRTMin, protocols::rotamer_recovery::RRProtocolRotamerTrials, protocols::rotamer_recovery::RRProtocolRelax, protocols::rotamer_recovery::RRProtocolReferenceStructure, protocols::rotamer_recovery::RRProtocolPackRotamers, protocols::rotamer_recovery::RRProtocolMover, and protocols::rotamer_recovery::RRProtocolMinPack.

measure_rotamer_recovery()

bool protocols::rotamer_recovery::RRProtocol::measure_rotamer_recovery ( RRComparerOP  comparer, RRReporterOP  reporter, core::pose::Pose const &  pose1, core::pose::Pose const &  pose2, core::conformation::Residue const &  res1, core::conformation::Residue const &  res2  )

protected

References protocols::hybridization::score.

Referenced by protocols::rotamer_recovery::RRProtocolMover::run(), protocols::rotamer_recovery::RRProtocolReferenceStructure::run(), protocols::rotamer_recovery::RRProtocolMinPack::run(), protocols::rotamer_recovery::RRProtocolPackRotamers::run(), protocols::rotamer_recovery::RRProtocolRelax::run(), protocols::rotamer_recovery::RRProtocolRotamerTrials::run(), and protocols::rotamer_recovery::RRProtocolRTMin::run().

parse_attributes_from_tag()

void protocols::rotamer_recovery::RRProtocol::parse_attributes_from_tag ( basic::datacache::DataMap const &  dm, utility::tag::TagCOP  tag  )

virtual

As the RRProtocol is being read in.

Reimplemented in protocols::rotamer_recovery::RRProtocolReferenceStructure.

run()

virtual void protocols::rotamer_recovery::RRProtocol::run ( RRComparerOP  comparer, RRReporterOP  reporter, core::pose::Pose const &  pose, core::scoring::ScoreFunction const &  score_function, core::pack::task::PackerTask const &  packer_task  )

pure virtual

Implemented in protocols::rotamer_recovery::RRProtocolRTMin, protocols::rotamer_recovery::RRProtocolRotamerTrials, protocols::rotamer_recovery::RRProtocolRelax, protocols::rotamer_recovery::RRProtocolPackRotamers, protocols::rotamer_recovery::RRProtocolMinPack, protocols::rotamer_recovery::RRProtocolReferenceStructure, and protocols::rotamer_recovery::RRProtocolMover.

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The documentation for this class was generated from the following files:

• src/protocols/rotamer_recovery/RRProtocol.hh
• src/protocols/rotamer_recovery/RRProtocol.cc