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core::energy_methods::SAXSEnergy Member List

This is the complete list of members for core::energy_methods::SAXSEnergy, including all inherited members.

a_ids_core::energy_methods::SAXSEnergymutableprivate
atom_ff_types_core::energy_methods::SAXSEnergymutableprivate
atomic_interaction_cutoff() constcore::scoring::methods::WholeStructureEnergyinlinevirtual
atomistic_energy(core::Size atmno, conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) constcore::scoring::methods::EnergyMethodvirtual
atomistic_pair_energy(core::Size atmno1, conformation::Residue const &rsd1, core::Size atomno2, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) constcore::scoring::methods::EnergyMethodvirtual
cen_cfg_file_core::energy_methods::SAXSEnergystatic
clone() const overridecore::energy_methods::SAXSEnergyinlinevirtual
compute_chi(utility::vector1< Real > const &, utility::vector1< Real > const &) constcore::energy_methods::SAXSEnergyprivate
compute_chi_with_fit(utility::vector1< Real > const &, utility::vector1< Real > const &) constcore::energy_methods::SAXSEnergyprivate
compute_distance_histogram(const core::pose::Pose &pose) constcore::energy_methods::SAXSEnergyprivate
compute_intensities(const core::pose::Pose &, utility::vector1< Real > &) constcore::energy_methods::SAXSEnergyprotected
compute_L1(utility::vector1< Real > const &, utility::vector1< Real > const &) constcore::energy_methods::SAXSEnergyprivate
compute_zero_intensity() constcore::energy_methods::SAXSEnergy
count_scoring_atoms()core::energy_methods::SAXSEnergyinline
create_energy_method(core::scoring::methods::EnergyMethodOptions const &) constcore::energy_methods::SAXSEnergyinline
defines_high_order_terms(pose::Pose const &) constcore::scoring::methods::EnergyMethodvirtual
dhist_core::energy_methods::SAXSEnergymutableprivate
EnergyMethod(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethod
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) constcore::scoring::methods::EnergyMethodvirtual
fa_cfg_file_core::energy_methods::SAXSEnergystatic
ff_manager_core::energy_methods::SAXSEnergyprivate
ff_map_core::energy_methods::SAXSEnergymutableprivate
ff_ops_core::energy_methods::SAXSEnergymutableprivate
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) constcore::scoring::methods::EnergyMethodvirtual
finalize_after_minimizing(pose::Pose &pose) constcore::scoring::methods::EnergyMethodvirtual
finalize_total_energy(pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const overridecore::energy_methods::SAXSEnergyvirtual
fit_intensities(const utility::vector1< Real > &, const utility::vector1< Real > &, utility::vector1< Real > &) constcore::energy_methods::SAXSEnergyprotected
get_pose_intensities()core::energy_methods::SAXSEnergyinline
get_q()core::energy_methods::SAXSEnergyinline
get_reference_intensities()core::energy_methods::SAXSEnergyinline
has_atomistic_energies() constcore::scoring::methods::EnergyMethodvirtual
has_atomistic_pairwise_energies() constcore::scoring::methods::EnergyMethodvirtual
if_hydrogens_core::energy_methods::SAXSEnergyprivate
indicate_required_context_graphs(utility::vector1< bool > &) const overridecore::energy_methods::SAXSEnergyinlinevirtual
init_ff(const std::string &)core::energy_methods::SAXSEnergyprotected
method_type() const overridecore::scoring::methods::WholeStructureEnergyvirtual
minimize_in_whole_structure_context(pose::Pose const &) constcore::scoring::methods::EnergyMethodvirtual
parent typedefcore::scoring::methods::WholeStructureEnergy
pose_intensities_core::energy_methods::SAXSEnergymutableprivate
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) constcore::scoring::methods::EnergyMethodvirtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) constcore::scoring::methods::EnergyMethodvirtual
q_core::energy_methods::SAXSEnergyprivate
r_ids_core::energy_methods::SAXSEnergymutableprivate
read_intensities(std::string &, utility::vector1< Real > &) constcore::energy_methods::SAXSEnergyprotected
read_spectrum(std::string &, utility::vector1< Real > &, utility::vector1< Real > &) constcore::energy_methods::SAXSEnergyprotected
reference_intensities_core::energy_methods::SAXSEnergymutableprivate
rehash_form_factors(const core::pose::Pose &pose) constcore::energy_methods::SAXSEnergyprotected
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) constcore::scoring::methods::EnergyMethodvirtual
saxs_score_variant_core::energy_methods::SAXSEnergyprotected
SAXSEnergy(std::string &, core::chemical::ResidueTypeSetCAP, core::scoring::ScoreType, core::scoring::methods::EnergyMethodCreatorOP)core::energy_methods::SAXSEnergy
SAXSEnergy(const std::string &, const utility::vector1< Real > &, const utility::vector1< Real > &, core::scoring::ScoreType, core::scoring::methods::EnergyMethodCreatorOP)core::energy_methods::SAXSEnergy
score_bias_core::energy_methods::SAXSEnergyprivate
score_types() constcore::scoring::methods::EnergyMethodinline
score_types_core::scoring::methods::EnergyMethodprivate
set_score_types(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethodprotected
set_up_q(const utility::vector1< Real > &)core::energy_methods::SAXSEnergyprotected
set_up_q()core::energy_methods::SAXSEnergyprotected
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) constcore::scoring::methods::EnergyMethodvirtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) constcore::scoring::methods::EnergyMethodvirtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) constcore::scoring::methods::EnergyMethodvirtual
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) constcore::scoring::methods::EnergyMethodvirtual
setup_for_scoring(pose::Pose &, ScoreFunction const &) constcore::scoring::methods::EnergyMethodvirtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) constcore::scoring::methods::EnergyMethodvirtual
show_additional_info(std::ostream &, pose::Pose &, bool) constcore::scoring::methods::EnergyMethodvirtual
the_config_file_core::energy_methods::SAXSEnergyprotected
total_energy(const pose::Pose &pose) constcore::energy_methods::SAXSEnergy
update_residue_for_packing(pose::Pose &, Size resid) constcore::scoring::methods::EnergyMethodvirtual
version() const overridecore::energy_methods::SAXSEnergyprivatevirtual
WholeStructureEnergy(EnergyMethodCreatorOP)core::scoring::methods::WholeStructureEnergy
zero_core::energy_methods::SAXSEnergymutableprivate
~SAXSEnergy() overridecore::energy_methods::SAXSEnergyinline
~WholeStructureEnergy() overridecore::scoring::methods::WholeStructureEnergyinline
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