| add_ligand_contact(core::Size) | protocols::sewing::data_storage::LigandSegment | |
| add_vital_residue(core::Size) | protocols::sewing::data_storage::SmartSegment | |
| attach_ligand(LigandResidueOP, bool) | protocols::sewing::data_storage::LigandSegment | |
| attach_unowned_ligand(LigandResidueCOP ligand_res) | protocols::sewing::data_storage::LigandSegment | |
| basis_pair_ | protocols::sewing::data_storage::SmartSegment | private |
| become(SmartSegmentOP changing_segment, SmartSegmentCOP src_segment) | protocols::sewing::data_storage::SmartSegment | static |
| c_terminal_neighbor_ | protocols::sewing::data_storage::SmartSegment | private |
| c_terminal_parent_ | protocols::sewing::data_storage::SmartSegment | private |
| clone() const | protocols::sewing::data_storage::LigandSegment | |
| const_reference_segment_ | protocols::sewing::data_storage::SmartSegment | private |
| dssp_code_ | protocols::sewing::data_storage::SmartSegment | private |
| get_basis_pair() const | protocols::sewing::data_storage::SmartSegment | |
| get_c_most_segment(SmartSegmentCOP, bool cross_chimaerae) | protocols::sewing::data_storage::SmartSegment | static |
| get_c_most_segment(SmartSegmentOP, bool cross_chimaerae) | protocols::sewing::data_storage::SmartSegment | static |
| get_c_terminal_neighbor() const | protocols::sewing::data_storage::SmartSegment | |
| get_c_terminal_parent() const | protocols::sewing::data_storage::SmartSegment | |
| get_const_owned_ligand_residues() const | protocols::sewing::data_storage::LigandSegment | |
| get_const_reference_segment() const | protocols::sewing::data_storage::SmartSegment | |
| get_const_residue_vector() const | protocols::sewing::data_storage::SmartSegment | |
| get_dssp_code() const | protocols::sewing::data_storage::SmartSegment | |
| get_far_c_terminal_parent(SmartSegmentOP current_segment) | protocols::sewing::data_storage::SmartSegment | static |
| get_far_n_terminal_parent(SmartSegmentOP current_segment) | protocols::sewing::data_storage::SmartSegment | static |
| get_length() const | protocols::sewing::data_storage::SmartSegment | |
| get_ligand_contact_indices() const | protocols::sewing::data_storage::LigandSegment | |
| get_ligand_residues() const | protocols::sewing::data_storage::LigandSegment | |
| get_n_most_segment(SmartSegmentCOP, bool cross_chimaerae) | protocols::sewing::data_storage::SmartSegment | static |
| get_n_most_segment(SmartSegmentOP, bool cross_chimaerae) | protocols::sewing::data_storage::SmartSegment | static |
| get_n_terminal_neighbor() const | protocols::sewing::data_storage::SmartSegment | |
| get_n_terminal_parent() const | protocols::sewing::data_storage::SmartSegment | |
| get_name() const override | protocols::sewing::data_storage::LigandSegment | inlinevirtual |
| get_nonconst_ligand_contact_indices() | protocols::sewing::data_storage::LigandSegment | |
| get_nonconst_ligand_residues() | protocols::sewing::data_storage::LigandSegment | |
| get_owned_ligand_residues() | protocols::sewing::data_storage::LigandSegment | |
| get_residue(core::Size resnum) | protocols::sewing::data_storage::SmartSegment | |
| get_residue_vector() | protocols::sewing::data_storage::SmartSegment | |
| get_segment_id() const | protocols::sewing::data_storage::SmartSegment | |
| get_vital_residues() const | protocols::sewing::data_storage::SmartSegment | |
| is_a_chimaera_ | protocols::sewing::data_storage::SmartSegment | private |
| is_c_terminus_fixed() const | protocols::sewing::data_storage::SmartSegment | |
| is_chimaeric() const | protocols::sewing::data_storage::SmartSegment | |
| is_hashable() const | protocols::sewing::data_storage::SmartSegment | |
| is_in_Assembly() const | protocols::sewing::data_storage::SmartSegment | |
| is_in_Assembly_ | protocols::sewing::data_storage::SmartSegment | private |
| is_n_terminus_fixed() const | protocols::sewing::data_storage::SmartSegment | |
| is_vital() const | protocols::sewing::data_storage::SmartSegment | |
| is_vital_ | protocols::sewing::data_storage::SmartSegment | private |
| isolate() | protocols::sewing::data_storage::SmartSegment | |
| length_ | protocols::sewing::data_storage::SmartSegment | private |
| ligand_contacts_ | protocols::sewing::data_storage::LigandSegment | private |
| ligand_residues_ | protocols::sewing::data_storage::LigandSegment | private |
| LigandSegment() | protocols::sewing::data_storage::LigandSegment | |
| LigandSegment(bool is_vital) | protocols::sewing::data_storage::LigandSegment | |
| LigandSegment(bool is_vital, core::Size max_segment_length) | protocols::sewing::data_storage::LigandSegment | |
| LigandSegment(LigandSegment const &src) | protocols::sewing::data_storage::LigandSegment | |
| LigandSegment(SmartSegment const &src, bool is_vital, std::set< core::Size > ligand_residues, core::Size ligand_to_attach) | protocols::sewing::data_storage::LigandSegment | |
| link_to(SmartSegmentOP n_term, SmartSegmentOP c_term) | protocols::sewing::data_storage::SmartSegment | static |
| n_terminal_neighbor_ | protocols::sewing::data_storage::SmartSegment | private |
| n_terminal_parent_ | protocols::sewing::data_storage::SmartSegment | private |
| owned_ligand_residues_ | protocols::sewing::data_storage::LigandSegment | private |
| residue_is_vital(core::Size) | protocols::sewing::data_storage::SmartSegment | |
| residues_ | protocols::sewing::data_storage::SmartSegment | private |
| segment_id_ | protocols::sewing::data_storage::SmartSegment | private |
| set_basis_pair(BasisPair basis_pair) | protocols::sewing::data_storage::SmartSegment | |
| set_c_terminal_neighbor(SmartSegmentOP new_c_terminal_neighbor) | protocols::sewing::data_storage::SmartSegment | |
| set_c_terminal_parent(SmartSegmentOP new_c_terminal_parent) | protocols::sewing::data_storage::SmartSegment | |
| set_chimaeric_status(bool is_chimaera) | protocols::sewing::data_storage::SmartSegment | |
| set_const_reference_segment(SmartSegmentCOP ref) | protocols::sewing::data_storage::SmartSegment | |
| set_dssp_code(char new_dssp_code) | protocols::sewing::data_storage::SmartSegment | |
| set_is_in_Assembly(bool) | protocols::sewing::data_storage::SmartSegment | |
| set_is_vital(bool) | protocols::sewing::data_storage::SmartSegment | |
| set_length(core::Size new_length) | protocols::sewing::data_storage::SmartSegment | |
| set_n_terminal_neighbor(SmartSegmentOP new_n_terminal_neighbor) | protocols::sewing::data_storage::SmartSegment | |
| set_n_terminal_parent(SmartSegmentOP new_n_terminal_parent) | protocols::sewing::data_storage::SmartSegment | |
| set_residue_vector(utility::vector1< SmartSewingResidueOP > new_residue_vector) | protocols::sewing::data_storage::SmartSegment | |
| set_segment_id(core::Size new_segment_id) | protocols::sewing::data_storage::SmartSegment | |
| set_vital_residues(std::set< core::Size >) | protocols::sewing::data_storage::SmartSegment | |
| SmartSegment() | protocols::sewing::data_storage::SmartSegment | |
| SmartSegment(bool is_vital) | protocols::sewing::data_storage::SmartSegment | |
| SmartSegment(bool is_vital, core::Size max_segment_length) | protocols::sewing::data_storage::SmartSegment | |
| SmartSegment(SmartSegment const &src) | protocols::sewing::data_storage::SmartSegment | |
| vital_residues_ | protocols::sewing::data_storage::SmartSegment | private |
| ~LigandSegment() override | protocols::sewing::data_storage::LigandSegment | |
| ~SmartSegment() override | protocols::sewing::data_storage::SmartSegment | |
