protocols::rotamer_recovery::RRProtocolRotamerTrials Class Reference

#include <RRProtocolRotamerTrials.hh>

Inheritance diagram for protocols::rotamer_recovery::RRProtocolRotamerTrials:

Public Member Functions
	RRProtocolRotamerTrials ()
	~RRProtocolRotamerTrials () override
	RRProtocolRotamerTrials (RRProtocolRotamerTrials const &)
std::string	get_name () const override
std::string	get_parameters () const override
void	run (RRComparerOP comparer, RRReporterOP reporter, core::pose::Pose const &pose, core::scoring::ScoreFunction const &score_function, core::pack::task::PackerTask const &packer_task) override
Public Member Functions inherited from protocols::rotamer_recovery::RRProtocol
	~RRProtocol () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...
virtual void	parse_attributes_from_tag (basic::datacache::DataMap const &dm, utility::tag::TagCOP tag)
	As the RRProtocol is being read in. More...

Additional Inherited Members
Protected Member Functions inherited from protocols::rotamer_recovery::RRProtocol
bool	measure_rotamer_recovery (RRComparerOP comparer, RRReporterOP reporter, core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::conformation::Residue const &res1, core::conformation::Residue const &res2)

Constructor & Destructor Documentation

RRProtocolRotamerTrials() [1/2]

protocols::rotamer_recovery::RRProtocolRotamerTrials::RRProtocolRotamerTrials ( )

default

~RRProtocolRotamerTrials()

protocols::rotamer_recovery::RRProtocolRotamerTrials::~RRProtocolRotamerTrials ( )

overridedefault

RRProtocolRotamerTrials() [2/2]

protocols::rotamer_recovery::RRProtocolRotamerTrials::RRProtocolRotamerTrials

(

RRProtocolRotamerTrials const &

)

Member Function Documentation

get_name()

string protocols::rotamer_recovery::RRProtocolRotamerTrials::get_name ( ) const

overridevirtual

Implements protocols::rotamer_recovery::RRProtocol.

get_parameters()

string protocols::rotamer_recovery::RRProtocolRotamerTrials::get_parameters ( ) const

overridevirtual

Implements protocols::rotamer_recovery::RRProtocol.

run()

void protocols::rotamer_recovery::RRProtocolRotamerTrials::run ( RRComparerOP  comparer, RRReporterOP  reporter, core::pose::Pose const &  pose, core::scoring::ScoreFunction const &  score_function, core::pack::task::PackerTask const &  packer_task  )

overridevirtual

For each residue, minimize it, and measure the rotamer compared to where it started

Implements protocols::rotamer_recovery::RRProtocol.

References core::chemical::aa_unk, core::pack::task::PackerTask::clone(), core::pack::create_packer_graph(), core::pack::rotamer_set::RotamerSetFactory::create_rotamer_set(), core::pack::task::PackerTask::include_current(), protocols::rotamer_recovery::RRProtocol::measure_rotamer_recovery(), core::pack::task::PackerTask::pack_residue(), core::pose::Pose::replace_residue(), core::pose::Pose::residue(), core::pack::rotamer_trials(), and core::pose::Pose::size().

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The documentation for this class was generated from the following files:

• src/protocols/rotamer_recovery/RRProtocolRotamerTrials.hh
• src/protocols/rotamer_recovery/RRProtocolRotamerTrials.cc