protocols::nonlocal::Chunk Class Reference

#include <Chunk.hh>

Inheritance diagram for protocols::nonlocal::Chunk:

Public Member Functions
	Chunk (RegionOP region, MoveMapOP movable)
	Default constructor <region> describes the contiguous stretch of residues. <movable> describes the modifiable degrees of freedom in the system. More...
	Chunk (const Chunk &other)
	Copy constructor. More...
	~Chunk () override
	Destructor. More...
Chunk &	operator= (const Chunk &other)
	Assignment operator. More...
core::Size	choose () const
	Chooses an allowable insertion position on [start, stop] according to the probability distribution. More...
core::Size	start () const
	Lower boundary of this chunk. More...
core::Size	stop () const
	Upper boundary of this chunk. More...
core::Size	length () const
	Returns the length of this region. More...
bool	is_movable () const
	Returns true if at least one position on [start(), stop()] is movable. More...
bool	valid () const
	Returns true if there is at least one valid insertion position in the closed region [start(), stop()], false otherwise. More...

Private Types
typedef boost::math::normal	Normal
typedef core::Size	Size
typedef core::kinematics::MoveMapOP	MoveMapOP

Private Attributes
RegionOP	region_
MoveMapOP	movable_
std::unique_ptr< numeric::random::DistributionSampler< Normal > >	sampler_

Member Typedef Documentation

MoveMapOP

typedef core::kinematics::MoveMapOP protocols::nonlocal::Chunk::MoveMapOP

private

Normal

typedef boost::math::normal protocols::nonlocal::Chunk::Normal

private

Size

typedef core::Size protocols::nonlocal::Chunk::Size

private

Constructor & Destructor Documentation

Chunk() [1/2]

protocols::nonlocal::Chunk::Chunk	(	RegionOP	region,
		MoveMapOP	movable
	)

Default constructor <region> describes the contiguous stretch of residues. <movable> describes the modifiable degrees of freedom in the system.

References SALT, sampler_, SD_MULTIPLIER, start(), and stop().

Chunk() [2/2]

protocols::nonlocal::Chunk::Chunk

(

const Chunk &

other

)

Copy constructor.

References sampler_.

~Chunk()

protocols::nonlocal::Chunk::~Chunk ( )

overridedefault

Destructor.

Member Function Documentation

choose()

Size protocols::nonlocal::Chunk::choose

(

)

const

Chooses an allowable insertion position on [start, stop] according to the probability distribution.

References movable_, sampler_, start(), stop(), and valid().

Referenced by protocols::nonlocal::SingleFragmentMover::apply().

is_movable()

bool protocols::nonlocal::Chunk::is_movable

(

)

const

Returns true if at least one position on [start(), stop()] is movable.

References movable_, start(), and stop().

Referenced by protocols::nonlocal::SingleFragmentMover::initialize_chunks(), and valid().

length()

Size protocols::nonlocal::Chunk::length

(

)

const

Returns the length of this region.

References region_.

operator=()

Chunk & protocols::nonlocal::Chunk::operator=

(

const Chunk &

other

)

Assignment operator.

References movable_, region_, and sampler_.

start()

Size protocols::nonlocal::Chunk::start

(

)

const

Lower boundary of this chunk.

References region_.

Referenced by choose(), Chunk(), is_movable(), and valid().

stop()

Size protocols::nonlocal::Chunk::stop

(

)

const

Upper boundary of this chunk.

References region_.

Referenced by choose(), Chunk(), is_movable(), and valid().

valid()

bool protocols::nonlocal::Chunk::valid

(

)

const

Returns true if there is at least one valid insertion position in the closed region [start(), stop()], false otherwise.

References is_movable(), start(), and stop().

Referenced by choose().

Member Data Documentation

movable_

MoveMapOP protocols::nonlocal::Chunk::movable_

private

Referenced by choose(), is_movable(), and operator=().

region_

RegionOP protocols::nonlocal::Chunk::region_

private

Referenced by length(), operator=(), start(), and stop().

sampler_

std::unique_ptr<numeric::random::DistributionSampler<Normal> > protocols::nonlocal::Chunk::sampler_

private

Referenced by choose(), Chunk(), and operator=().

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The documentation for this class was generated from the following files:

• src/protocols/nonlocal/Chunk.hh
• src/protocols/nonlocal/Chunk.cc