ScoreType.hh File Reference

Score type enumeration. More...

#include <iosfwd>
#include <utility/vector1.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::scoring

Typedefs
typedef utility::vector1< ScoreType >	core::scoring::ScoreTypes

Enumerations
enum	core::scoring::ScoreType {   core::scoring::fa_atr = 1 , core::scoring::fa_rep , core::scoring::fa_sol , core::scoring::fa_intra_atr ,   core::scoring::fa_intra_rep , core::scoring::fa_intra_sol , core::scoring::fa_intra_atr_xover4 , core::scoring::fa_intra_rep_xover4 ,   core::scoring::fa_intra_sol_xover4 , core::scoring::fa_intra_atr_nonprotein , core::scoring::fa_intra_rep_nonprotein , core::scoring::fa_intra_sol_nonprotein ,   core::scoring::fa_intra_RNA_base_phos_atr , core::scoring::fa_intra_RNA_base_phos_rep , core::scoring::fa_intra_RNA_base_phos_sol , core::scoring::fa_atr_dummy ,   core::scoring::fa_rep_dummy , core::scoring::fa_sol_dummy , core::scoring::fa_vdw_tinker , core::scoring::lk_hack ,   core::scoring::lk_ball , core::scoring::lk_ball_wtd , core::scoring::lk_ball_iso , core::scoring::lk_ball_bridge ,   core::scoring::lk_ball_bridge_uncpl , core::scoring::lk_dome , core::scoring::lk_dome_iso , core::scoring::lk_dome_bridge ,   core::scoring::lk_dome_bridge_uncpl , core::scoring::lk_ball_bridge2 , core::scoring::lk_ball_bridge_uncpl2 , core::scoring::lk_dome_pack ,   core::scoring::coarse_fa_atr , core::scoring::coarse_fa_rep , core::scoring::coarse_fa_sol , core::scoring::coarse_beadlj ,   core::scoring::mm_lj_intra_rep , core::scoring::mm_lj_intra_atr , core::scoring::mm_lj_inter_rep , core::scoring::mm_lj_inter_atr ,   core::scoring::mm_twist , core::scoring::mm_bend , core::scoring::mm_stretch , core::scoring::lk_costheta ,   core::scoring::lk_polar , core::scoring::lk_nonpolar , core::scoring::lk_polar_intra_RNA , core::scoring::lk_nonpolar_intra_RNA ,   core::scoring::fa_elec , core::scoring::fa_elec_bb_bb , core::scoring::fa_elec_bb_sc , core::scoring::fa_elec_sc_sc ,   core::scoring::fa_intra_elec , core::scoring::fa_imm_elec , core::scoring::h2o_hbond , core::scoring::dna_dr ,   core::scoring::dna_bp , core::scoring::dna_bs , core::scoring::dna_ref , core::scoring::peptide_bond ,   core::scoring::pcs , core::scoring::pcsTs1 , core::scoring::pcsTs2 , core::scoring::pcsTs3 ,   core::scoring::pcsTs4 , core::scoring::pcs2 , core::scoring::fastsaxs , core::scoring::saxs_score ,   core::scoring::saxs_cen_score , core::scoring::saxs_fa_score , core::scoring::pddf_score , core::scoring::fiberdiffraction ,   core::scoring::fiberdiffractiondens , core::scoring::epr_deer_score , core::scoring::fa_mbenv , core::scoring::fa_mbsolv ,   core::scoring::fa_elec_rna_phos_phos , core::scoring::fa_elec_rna_phos_sugr , core::scoring::fa_elec_rna_phos_base , core::scoring::fa_elec_rna_sugr_sugr ,   core::scoring::fa_elec_rna_sugr_base , core::scoring::fa_elec_rna_base_base , core::scoring::fa_elec_rna_phos_phos_fast , core::scoring::fa_elec_rna_phos_sugr_fast ,   core::scoring::fa_elec_rna_phos_base_fast , core::scoring::fa_elec_rna_sugr_sugr_fast , core::scoring::fa_elec_rna_sugr_base_fast , core::scoring::fa_elec_rna_base_base_fast ,   core::scoring::fa_elec_aro_aro , core::scoring::fa_elec_aro_all , core::scoring::hack_aro , core::scoring::rna_fa_atr_base ,   core::scoring::rna_fa_rep_base , core::scoring::rna_data_backbone , core::scoring::ch_bond , core::scoring::ch_bond_bb_bb ,   core::scoring::ch_bond_sc_sc , core::scoring::ch_bond_bb_sc , core::scoring::pro_close , core::scoring::rama2b ,   core::scoring::vdw , core::scoring::cenpack , core::scoring::cenpack_smooth , core::scoring::cen_hb ,   core::scoring::hybrid_vdw , core::scoring::gauss , core::scoring::rna_vdw , core::scoring::rnp_vdw ,   core::scoring::rna_base_backbone , core::scoring::rna_backbone_backbone , core::scoring::rna_repulsive , core::scoring::rna_base_pair_pairwise ,   core::scoring::rna_base_axis_pairwise , core::scoring::rna_base_stagger_pairwise , core::scoring::rna_base_stack_pairwise , core::scoring::rna_base_stack_axis_pairwise ,   core::scoring::rna_data_base , core::scoring::rna_base_pair , core::scoring::rna_base_axis , core::scoring::rna_base_stagger ,   core::scoring::rna_base_stack , core::scoring::rna_base_stack_axis , core::scoring::rnp_base_pair , core::scoring::rnp_stack ,   core::scoring::rnp_stack_xy , core::scoring::rnp_pair , core::scoring::rnp_pair_dist , core::scoring::rnp_aa_to_rna_backbone ,   core::scoring::rna_mg_point , core::scoring::rna_mg_point_indirect , core::scoring::mg , core::scoring::mg_lig ,   core::scoring::mg_sol , core::scoring::mg_ref , core::scoring::hoh_ref , core::scoring::rna_torsion ,   core::scoring::rna_torsion_sc , core::scoring::rna_suite , core::scoring::rna_jr_suite , core::scoring::suiteness_bonus ,   core::scoring::tna_suite , core::scoring::rna_sugar_close , core::scoring::fa_stack , core::scoring::fa_stack_lower ,   core::scoring::fa_stack_upper , core::scoring::fa_stack_aro , core::scoring::fa_stack_ext , core::scoring::fa_stack_sol ,   core::scoring::fa_stack_lr , core::scoring::fa_stack_rna_protein , core::scoring::fa_stack_rna_protein_aro , core::scoring::ss_contact_worst ,   core::scoring::stack_elec , core::scoring::stack_elec_base_base , core::scoring::stack_elec_base_bb , core::scoring::alignment ,   core::scoring::dna_bb_torsion , core::scoring::dna_sugar_close , core::scoring::dna_base_distance , core::scoring::geom_sol_fast ,   core::scoring::geom_sol_fast_intra_RNA , core::scoring::fa_cust_pair_dist , core::scoring::custom_atom_pair , core::scoring::orbitals_hpol_bb ,   core::scoring::pci_cation_pi , core::scoring::pci_pi_pi , core::scoring::pci_salt_bridge , core::scoring::pci_hbond ,   core::scoring::arg_cation_pi , core::scoring::python , core::scoring::n_ci_2b_score_types = python , core::scoring::fa_pair ,   core::scoring::fa_pair_aro_aro , core::scoring::fa_pair_aro_pol , core::scoring::fa_pair_pol_pol , core::scoring::hbond_sr_bb ,   core::scoring::hbond_lr_bb , core::scoring::hbond_bb_sc , core::scoring::hbond_sr_bb_sc , core::scoring::hbond_lr_bb_sc ,   core::scoring::hbond_sc , core::scoring::hbond_intra , core::scoring::hbond_wat , core::scoring::wat_entropy ,   core::scoring::hbond , core::scoring::npd_hbond_sr_bb , core::scoring::npd_hbond_lr_bb , core::scoring::npd_hbond_bb_sc ,   core::scoring::npd_hbond_sr_bb_sc , core::scoring::npd_hbond_lr_bb_sc , core::scoring::npd_hbond_sc , core::scoring::npd_hbond_intra ,   core::scoring::npd_hbond , core::scoring::fa_grpelec , core::scoring::interface_dd_pair , core::scoring::geom_sol ,   core::scoring::geom_sol_intra_RNA , core::scoring::occ_sol_fitted , core::scoring::occ_sol_fitted_onebody , core::scoring::occ_sol_exact ,   core::scoring::cen_rot_pair , core::scoring::cen_rot_pair_ang , core::scoring::cen_rot_pair_dih , core::scoring::pair ,   core::scoring::cen_pair_smooth , core::scoring::Mpair , core::scoring::MPPair , core::scoring::FaMPSolv ,   core::scoring::suck , core::scoring::rna_rg , core::scoring::rna_motif , core::scoring::facts_elec ,   core::scoring::facts_solv , core::scoring::facts_sasa , core::scoring::motif_dock , core::scoring::pointwater ,   core::scoring::goap , core::scoring::goap_dist , core::scoring::goap_angle , core::scoring::approximate_buried_unsat_penalty ,   core::scoring::interchain_pair , core::scoring::interchain_vdw , core::scoring::n_shortranged_2b_score_types = interchain_vdw , core::scoring::gb_elec ,   core::scoring::multipole_elec , core::scoring::fa_sasa , core::scoring::dslf_ss_dst , core::scoring::dslf_cs_ang ,   core::scoring::dslf_ss_dih , core::scoring::dslf_ca_dih , core::scoring::dslf_cbs_ds , core::scoring::dslf_fa13 ,   core::scoring::dslfc_cen_dst , core::scoring::dslfc_cb_dst , core::scoring::dslfc_ang , core::scoring::dslfc_cb_dih ,   core::scoring::dslfc_bb_dih , core::scoring::dslfc_rot , core::scoring::dslfc_trans , core::scoring::dslfc_RT ,   core::scoring::atom_pair_constraint , core::scoring::base_pair_constraint , core::scoring::coarse_chainbreak_constraint , core::scoring::constant_constraint ,   core::scoring::coordinate_constraint , core::scoring::angle_constraint , core::scoring::dihedral_constraint , core::scoring::big_bin_constraint ,   core::scoring::dunbrack_constraint , core::scoring::site_constraint , core::scoring::metalhash_constraint , core::scoring::metalbinding_constraint ,   core::scoring::rna_stub_coord_hack , core::scoring::bond_geometry , core::scoring::rna_bond_geometry , core::scoring::Hpol_bond_geometry ,   core::scoring::rama , core::scoring::omega , core::scoring::fa_dun , core::scoring::fa_dun_dev ,   core::scoring::fa_dun_rot , core::scoring::fa_dun_semi , core::scoring::cen_rot_dun , core::scoring::dna_chi ,   core::scoring::p_aa_pp , core::scoring::p_aa_ss , core::scoring::yhh_planarity , core::scoring::hxl_tors ,   core::scoring::h2o_intra , core::scoring::ref , core::scoring::ref_nc , core::scoring::seqdep_ref ,   core::scoring::nmer_ref , core::scoring::nmer_pssm , core::scoring::nmer_svm , core::scoring::envsmooth ,   core::scoring::e_pH , core::scoring::rna_bulge , core::scoring::dna_dihedral_bb , core::scoring::dna_dihedral_chi ,   core::scoring::dna_dihedral_sugar , core::scoring::sugar_bb , core::scoring::free_suite , core::scoring::free_2HOprime ,   core::scoring::free_side_chain , core::scoring::free_base , core::scoring::free_res , core::scoring::free_dof ,   core::scoring::intermol , core::scoring::other_pose , core::scoring::special_rot , core::scoring::PB_elec ,   core::scoring::cen_env_smooth , core::scoring::cbeta_smooth , core::scoring::cen_rot_env , core::scoring::cen_rot_cbeta ,   core::scoring::env , core::scoring::cbeta , core::scoring::DFIRE , core::scoring::Menv ,   core::scoring::Mcbeta , core::scoring::Menv_non_helix , core::scoring::Menv_termini , core::scoring::Menv_tm_proj ,   core::scoring::Mlipo , core::scoring::rg , core::scoring::rg_local , core::scoring::co ,   core::scoring::hs_pair , core::scoring::ss_pair , core::scoring::rsigma , core::scoring::sheet ,   core::scoring::burial_v2 , core::scoring::burial , core::scoring::abego , core::scoring::covalent_labeling ,   core::scoring::covalent_labeling_fa , core::scoring::hrf_ms_labeling , core::scoring::hrf_dynamics , core::scoring::ccs_imms ,   core::scoring::depc_ms , core::scoring::rnp_env , core::scoring::loop_close , core::scoring::missing_res ,   core::scoring::MPEnv , core::scoring::MPCbeta , core::scoring::MPLipo , core::scoring::MPTermini ,   core::scoring::MPNonHelix , core::scoring::MPTMProj , core::scoring::FaMPEnv , core::scoring::FaMPEnvSmooth ,   core::scoring::fa_water_to_bilayer , core::scoring::f_elec_lipidlayer , core::scoring::FaMPAsymEzCB , core::scoring::FaMPAsymEzCG ,   core::scoring::MPResidueLipophilicity , core::scoring::span_ins , core::scoring::mp_span_ang , core::scoring::MPHelicality ,   core::scoring::natbias_ss , core::scoring::natbias_hs , core::scoring::natbias_hh , core::scoring::natbias_stwist ,   core::scoring::aa_cmp , core::scoring::dock_ens_conf , core::scoring::csa , core::scoring::dc ,   core::scoring::rdc , core::scoring::rdc_segments , core::scoring::rdc_rohl , core::scoring::nmr_pcs ,   core::scoring::nmr_rdc , core::scoring::nmr_pre , core::scoring::cen_pair_motifs , core::scoring::cen_pair_motif_degree ,   core::scoring::holes , core::scoring::holes_decoy , core::scoring::holes_resl , core::scoring::holes_min ,   core::scoring::holes_min_mean , core::scoring::rna_chem_shift , core::scoring::rna_chem_map , core::scoring::rna_chem_map_lores ,   core::scoring::rna_partition , core::scoring::dab_sasa , core::scoring::dab_sev , core::scoring::sa ,   core::scoring::d2h_sa , core::scoring::ProQM , core::scoring::ProQ , core::scoring::interchain_env ,   core::scoring::interchain_contact , core::scoring::chainbreak , core::scoring::linear_chainbreak , core::scoring::overlap_chainbreak ,   core::scoring::distance_chainbreak , core::scoring::dof_constraint , core::scoring::branch_conn , core::scoring::linear_branch_conn ,   core::scoring::rama_prepro , core::scoring::paa_abego3 , core::scoring::cart_bonded , core::scoring::cart_bonded_angle ,   core::scoring::cart_bonded_length , core::scoring::cart_bonded_ring , core::scoring::cart_bonded_torsion , core::scoring::cart_bonded_proper ,   core::scoring::cart_bonded_improper , core::scoring::gen_bonded , core::scoring::gen_bonded_bond , core::scoring::gen_bonded_angle ,   core::scoring::gen_bonded_torsion , core::scoring::gen_bonded_improper , core::scoring::neigh_vect , core::scoring::neigh_count ,   core::scoring::neigh_vect_raw , core::scoring::symE_bonus , core::scoring::sym_lig , core::scoring::mhc_epitope ,   core::scoring::pack_stat , core::scoring::rms , core::scoring::res_type_constraint , core::scoring::res_type_linking_constraint ,   core::scoring::pocket_constraint , core::scoring::backbone_stub_constraint , core::scoring::backbone_stub_linear_constraint , core::scoring::surface ,   core::scoring::p_aa , core::scoring::unfolded , core::scoring::split_unfolded_two_body , core::scoring::fa_atr_ref ,   core::scoring::fa_rep_ref , core::scoring::fa_sol_ref , core::scoring::fa_elec_ref , core::scoring::hbond_ref ,   core::scoring::dslf_fa13_ref , core::scoring::fa_intra_atr_ref , core::scoring::fa_intra_rep_ref , core::scoring::fa_intra_sol_ref ,   core::scoring::pro_close_ref , core::scoring::fa_dun_ref , core::scoring::fa_dun_dev_ref , core::scoring::fa_dun_rot_ref ,   core::scoring::fa_dun_semi_ref , core::scoring::rama_ref , core::scoring::p_aa_pp_ref , core::scoring::omega_ref ,   core::scoring::mm_lj_intra_rep_ref , core::scoring::mm_lj_intra_atr_ref , core::scoring::mm_twist_ref , core::scoring::elec_dens_fast ,   core::scoring::elec_dens_window , core::scoring::elec_dens_whole_structure_ca , core::scoring::elec_dens_whole_structure_allatom , core::scoring::elec_dens_atomwise ,   core::scoring::grid_vdw , core::scoring::xtal_ml , core::scoring::xtal_rwork , core::scoring::xtal_rfree ,   core::scoring::hpatch , core::scoring::Menv_smooth , core::scoring::wat_desolv , core::scoring::ring_close ,   core::scoring::aa_repeat , core::scoring::aa_composition , core::scoring::aspartimide_penalty , core::scoring::hbnet ,   core::scoring::buried_unsatisfied_penalty , core::scoring::netcharge , core::scoring::voids_penalty , core::scoring::sap_constraint ,   core::scoring::dna_env , core::scoring::dna_pair , core::scoring::dump_trajectory , core::scoring::sidechain_neighbors ,   core::scoring::target_clash , core::scoring::membrane_span_constraint , core::scoring::membrane_span_term_z_constraint , core::scoring::aromatic_restraint ,   core::scoring::rna_coarse_dist , core::scoring::total_score , core::scoring::dummy_score_type , core::scoring::n_score_types = dummy_score_type ,   core::scoring::end_of_score_type_enumeration = dummy_score_type }
	Type for looking up cached energies. More...

Functions
ScoreType	core::scoring::score_type_from_name (std::string const &name)
	give a ScoreType string name and return its enum type More...
std::string	core::scoring::name_from_score_type (ScoreType score_type)
	Returns the name of the ScoreType <score_type> More...
std::istream &	core::scoring::operator>> (std::istream &is, ScoreType &score_type)
	input operator for ScoreType enum type More...
std::ostream &	core::scoring::operator<< (std::ostream &os, ScoreType const &score_type)
	output operator for ScoreType enum type More...
std::ostream &	core::scoring::operator<< (std::ostream &os, ScoreTypes const &score_types)
	output operator for ScoreTypes list type More...

Detailed Description

Score type enumeration.

Author

Phil Bradley